RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 SENP8Q96LD8 212 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 IER2Q9BTL4 223 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 ZSCAN16Q9H4T2 348 aaPredicted RBP16.15■□□□□ 0.18
CLN3-222ENST00000566083 YIPF1Q9Y548 306 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 TIMM13Q9Y5L4 95 aaPredicted RBP16.15■□□□□ 0.18
CLN3-222ENST00000566083 ANO9A1A5B4 782 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 PIRO00625 290 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 LDHAP00338 332 aaKnown RBP16.14■□□□□ 0.17
CLN3-222ENST00000566083 SP9P0CG40 484 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 MYL4P12829 197 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 MLLT6P55198 1093 aaPredicted RBP16.14■□□□□ 0.17
CLN3-222ENST00000566083 CENPPQ6IPU0 288 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 SLC39A4Q6P5W5 647 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 TPRG1Q6ZUI0 275 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 THEM5Q8N1Q8 247 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 C2orf15Q8WU43 125 aaKnown RBP16.14■□□□□ 0.17
CLN3-222ENST00000566083 POMGNT1Q8WZA1 660 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 CLDN23Q96B33 292 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 TCEAL4Q96EI5 215 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 SLITRK6Q9H5Y7 841 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 MRPL44Q9H9J2 332 aaKnown RBP16.14■□□□□ 0.17
CLN3-222ENST00000566083 SPATA6Q9NWH7 488 aaPredicted RBP16.14■□□□□ 0.17
CLN3-222ENST00000566083 ZMYM5Q9UJ78 669 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 FBXO2Q9UK22 296 aaPredicted RBP16.14■□□□□ 0.17
CLN3-222ENST00000566083 PCDHB13Q9Y5F0 798 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 CLIC4Q9Y696 253 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 MIA3Q5JRA6 1907 aa16.14■□□□□ 0.17
CLN3-222ENST00000566083 USP34Q70CQ2 3546 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 PDIA4P13667 645 aaKnown RBP16.13■□□□□ 0.17
CLN3-222ENST00000566083 SYT1P21579 422 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 FCARP24071 287 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 PNPLA4P41247 253 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 CCR2P41597 374 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 ACOT2P49753 483 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 TAF6P49848 677 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 DUSP4Q13115 394 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 ZC2HC1CQ53FD0 456 aaPredicted RBP16.13■□□□□ 0.17
CLN3-222ENST00000566083 DYMQ7RTS9 669 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 MSANTD3Q96H12 275 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 ACCSQ96QU6 501 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 PLA2G2FQ9BZM2 168 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 LRRC27Q9C0I9 530 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 OLFML3Q9NRN5 406 aa16.13■□□□□ 0.17
CLN3-222ENST00000566083 ANKRD63C9JTQ0 380 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 ZNF263O14978 683 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 NFICP08651 508 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 PPP2R5DQ14738 602 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 VEPH1Q14D04 833 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 OTOGLQ3ZCN5 2332 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 ARHGAP15Q53QZ3 475 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 SFR1Q86XK3 245 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 MFSD6LQ8IWD5 586 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 YAF2Q8IY57 180 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 HS6ST3Q8IZP7 471 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 ZSCAN18Q8TBC5 510 aaPredicted RBP16.12■□□□□ 0.17
CLN3-222ENST00000566083 CACTINQ8WUQ7 758 aaKnown RBP16.12■□□□□ 0.17
CLN3-222ENST00000566083 PSMG2Q969U7 264 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 ZNF560Q96MR9 790 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 PGLYRP2Q96PD5 576 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 FAM126AQ9BYI3 521 aaPredicted RBP16.12■□□□□ 0.17
CLN3-222ENST00000566083 HEBP1Q9NRV9 189 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 DPP3Q9NY33 737 aa16.12■□□□□ 0.17
CLN3-222ENST00000566083 MTMR11A4FU01 709 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 KIAA0391O15091 583 aaKnown RBP16.11■□□□□ 0.17
CLN3-222ENST00000566083 SPTLC1O15269 473 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 KINO60870 393 aaKnown RBP16.11■□□□□ 0.17
CLN3-222ENST00000566083 PPP1R37O75864 691 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 GUCY2FP51841 1108 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 RESTQ13127 1097 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 SLC39A14Q15043 492 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 SV2CQ496J9 727 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 L1TD1Q5T7N2 865 aaKnown RBP16.11■□□□□ 0.17
CLN3-222ENST00000566083 MAMSTRQ6ZN01 415 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 STXBP4Q6ZWJ1 553 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 STRA6Q9BX79 667 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 TMEM206Q9H813 350 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 ZNF334Q9HCZ1 680 aaPredicted RBP16.11■□□□□ 0.17
CLN3-222ENST00000566083 PCDHGA2Q9Y5H1 932 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 CYB561D2O14569 222 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 MOSPD3O75425 235 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 OR4Q2P0C623 313 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 GARTP22102 1010 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 GDI1P31150 447 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 STAT6P42226 847 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 GRM2Q14416 872 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 TEAD2Q15562 447 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 TAF12Q16514 161 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 VITQ6UXI7 678 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 USP49Q70CQ1 688 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 DNAJB7Q7Z6W7 309 aaPredicted RBP16.11■□□□□ 0.17
CLN3-222ENST00000566083 DCP1BQ8IZD4 617 aaKnown RBP16.11■□□□□ 0.17
CLN3-222ENST00000566083 SYCP3Q8IZU3 236 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 ATAD1Q8NBU5 361 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 SHKBP1Q8TBC3 707 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 SPPL2BQ8TCT7 592 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 ATRIPQ8WXE1 791 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 ZSWIM3Q96MP5 696 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 LRRC3Q9BY71 257 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 OBP2AQ9NY56 170 aa16.11■□□□□ 0.17
CLN3-222ENST00000566083 R4GN57 208 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms