RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 EFCAB13Q8IY85 973 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 DTWD2Q8NBA8 298 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 CCDC127Q96BQ5 260 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 MRPL17Q9NRX2 175 aaKnown RBP18.62■□□□□ 0.57
CLN3-217ENST00000565354 DMAC2Q9NW81 257 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 DPP3Q9NY33 737 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 CTNND2Q9UQB3 1225 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 ANK1P16157 1881 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 BICDL2A1A5D9 508 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 C2CD2LO14523 706 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 CETN3O15182 167 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 KRT13P13646 458 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 CCNE1P24864 410 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 LRPAP1P30533 357 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 GLUD2P49448 558 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 LRRC63Q05C16 580 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 PSMD6Q15008 389 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 USP41Q3LFD5 358 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 FAM171A1Q5VUB5 890 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 LMBRD2Q68DH5 695 aaPredicted RBP18.61■□□□□ 0.57
CLN3-217ENST00000565354 CENPPQ6IPU0 288 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 CCDC149Q6ZUS6 474 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 OTOP3Q7RTS5 596 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 USP37Q86T82 979 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 FEZF2Q8TBJ5 459 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 NELFBQ8WX92 580 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 GPR62Q9BZJ7 368 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 SFXN1Q9H9B4 322 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 FBXL21Q9UKT6 434 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 DUSP12Q9UNI6 340 aa18.61■□□□□ 0.57
CLN3-217ENST00000565354 OTOGLQ3ZCN5 2332 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 KRT19P08727 400 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 BRCC3P46736 316 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 WNT7BP56706 349 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 PAK1Q13153 545 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 DUOXA2Q1HG44 320 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 C9orf57Q5W0N0 161 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 GPR149Q86SP6 731 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 PPFIBP1Q86W92 1011 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 WDR49Q8IV35 697 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 FAM186BQ8IYM0 893 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 C3orf58Q8NDZ4 430 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 TMEM174Q8WUU8 243 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 ZNF560Q96MR9 790 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 CGRRF1Q99675 332 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 VN1R3Q9BXE9 311 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 EMILIN2Q9BXX0 1053 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 MTMR12Q9C0I1 747 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 KCNK12Q9HB15 430 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 INTS13Q9NVM9 706 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 NCOR2Q9Y618 2525 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 CACNA1BQ00975 2339 aa18.6■□□□□ 0.57
CLN3-217ENST00000565354 TRIM49BA6NDI0 452 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 CLSTN1O94985 981 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 EPB41P11171 864 aaKnown RBP18.59■□□□□ 0.57
CLN3-217ENST00000565354 CD44P16070 742 aaKnown RBP18.59■□□□□ 0.57
CLN3-217ENST00000565354 BMP6P22004 513 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 PSMC2P35998 433 aaKnown RBP18.59■□□□□ 0.57
CLN3-217ENST00000565354 CASP4P49662 377 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 FKBP3Q00688 224 aaKnown RBP18.59■□□□□ 0.57
CLN3-217ENST00000565354 ZCWPW2Q504Y3 356 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 CCDC183Q5T5S1 534 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 ANKRD40Q6AI12 368 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 DSTYKQ6XUX3 929 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 TAS1R1Q7RTX1 841 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 SIX5Q8N196 739 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 TMEM130Q8N3G9 435 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 RIN2Q8WYP3 895 aaPredicted RBP18.59■□□□□ 0.57
CLN3-217ENST00000565354 SYAP1Q96A49 352 aaPredicted RBP18.59■□□□□ 0.57
CLN3-217ENST00000565354 TTPALQ9BTX7 342 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 DACH1Q9UI36 760 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 ITGA11Q9UKX5 1188 aa18.59■□□□□ 0.57
CLN3-217ENST00000565354 SPDYE4A6NLX3 237 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 PPP1R3GB7ZBB8 358 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 I3L4J1 428 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 PHACTR2O75167 634 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 ITGB3P05106 788 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 POLR2BP30876 1174 aaKnown RBP18.58■□□□□ 0.56
CLN3-217ENST00000565354 STX17P56962 302 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 DSG1Q02413 1049 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 PTPN14Q15678 1187 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 PDXDC1Q6P996 788 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.58■□□□□ 0.56
CLN3-217ENST00000565354 CSGALNACT2Q8N6G5 542 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 MLKLQ8NB16 471 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 B3GALT6Q96L58 329 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 SEMA4AQ9H3S1 761 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 AGAP1Q9UPQ3 857 aa18.58■□□□□ 0.56
CLN3-217ENST00000565354 FANCMQ8IYD8 2048 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 ARHGEF37A1IGU5 675 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 MAPK13O15264 365 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 AKAP3O75969 853 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 LMNAP02545 664 aaKnown RBP18.57■□□□□ 0.56
CLN3-217ENST00000565354 PAX3P23760 479 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 PNPLA4P41247 253 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 TAF6P49848 677 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 PMS1P54277 932 aaKnown RBP18.57■□□□□ 0.56
CLN3-217ENST00000565354 NLRP12P59046 1061 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 RBP5P82980 135 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 CREMQ03060 361 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms