RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CCNE1P24864 410 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 UBA7P41226 1012 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 ALDH1A3P47895 512 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 EPHB3P54753 998 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 LILRA4P59901 499 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 PLD1Q13393 1074 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 KYAT1Q16773 422 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 SPATA1Q5VX52 437 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 JADE1Q6IE81 842 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 TTC9BQ8N6N2 239 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 KCNN1Q92952 543 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 MSTO1Q9BUK6 570 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 OXCT2Q9BYC2 517 aaPredicted RBP18.31■□□□□ 0.52
CLN3-211ENST00000564091 GPR88Q9GZN0 384 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 ZHX3Q9H4I2 956 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 PARVGQ9HBI0 331 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 BLOC1S4Q9NUP1 217 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 ODF2LQ9ULJ1 636 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 MYH15Q9Y2K3 1946 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 A0A0B4J269 797 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 MTMR11A4FU01 709 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 ARNTLO00327 626 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 XPOTO43592 962 aaKnown RBP18.3■□□□□ 0.52
CLN3-211ENST00000564091 TRAK2O60296 914 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 PIGRP01833 764 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 ADRB2P07550 413 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 TYMPP19971 482 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 GRIN1Q05586 938 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 MCM6Q14566 821 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 SLC39A4Q6P5W5 647 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 DNAJB7Q7Z6W7 309 aaPredicted RBP18.3■□□□□ 0.52
CLN3-211ENST00000564091 YAF2Q8IY57 180 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 CALML4Q96GE6 196 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 SENP8Q96LD8 212 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 AK8Q96MA6 479 aa18.3■□□□□ 0.52
CLN3-211ENST00000564091 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.3■□□□□ 0.52
CLN3-211ENST00000564091 KRT18P05783 430 aaKnown RBP18.29■□□□□ 0.52
CLN3-211ENST00000564091 NFICP08651 508 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 CHRNB1P11230 501 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 TDGF1P13385 188 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 NMT1P30419 496 aaKnown RBP18.29■□□□□ 0.52
CLN3-211ENST00000564091 SOX9P48436 509 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 ZNF131P52739 623 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 MYBPC2Q14324 1141 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 GAS6Q14393 721 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 KARSQ15046 597 aaKnown RBP18.29■□□□□ 0.52
CLN3-211ENST00000564091 LPAL2Q16609 132 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 C9orf57Q5W0N0 161 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 ARMCX5Q6P1M9 558 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 GAREM2Q75VX8 874 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 ARID3BQ8IVW6 561 aaPredicted RBP18.29■□□□□ 0.52
CLN3-211ENST00000564091 OR10T2Q8NGX3 314 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 TTC8Q8TAM2 541 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 RAD54LQ92698 747 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 E2F7Q96AV8 911 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 LRRC3BQ96PB8 259 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 FIZ1Q96SL8 496 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 FAM126AQ9BYI3 521 aaPredicted RBP18.29■□□□□ 0.52
CLN3-211ENST00000564091 ATXN3LQ9H3M9 355 aa18.29■□□□□ 0.52
CLN3-211ENST00000564091 CPSF3Q9UKF6 684 aaKnown RBP18.29■□□□□ 0.52
CLN3-211ENST00000564091 SLC38A8A6NNN8 435 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 TISP43B9A030 160 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 ANKRD63C9JTQ0 380 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 ODC1P11926 461 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 PLCG1P19174 1290 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 ACOT2P49753 483 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 KPNA1P52294 538 aaPredicted RBP18.28■□□□□ 0.52
CLN3-211ENST00000564091 SATB1Q01826 763 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 MAMSTRQ6ZN01 415 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 RASSF8Q8NHQ8 419 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 CSGALNACT1Q8TDX6 532 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 SECISBP2LQ93073 1101 aaKnown RBP18.28■□□□□ 0.52
CLN3-211ENST00000564091 ZFYVE19Q96K21 471 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 MKNK1Q9BUB5 465 aa18.28■□□□□ 0.52
CLN3-211ENST00000564091 RBM12Q9NTZ6 932 aaKnown RBP18.28■□□□□ 0.52
CLN3-211ENST00000564091 PIRO00625 290 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 CHADO15335 359 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 SLC26A4O43511 780 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 GABRR2P28476 465 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 CCR3P51677 355 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 GTF2BQ00403 316 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 FCHO2Q0JRZ9 810 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 TMEM132DQ14C87 1099 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 ZC2HC1CQ53FD0 456 aaPredicted RBP18.27■□□□□ 0.52
CLN3-211ENST00000564091 GPR158Q5T848 1215 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 CD302Q8IX05 232 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 PSMG2Q969U7 264 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 TSPAN18Q96SJ8 248 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 LPIN3Q9BQK8 851 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 IKZF4Q9H2S9 585 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 SMC3Q9UQE7 1217 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 ASB3Q9Y575 518 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 SPTBN2O15020 2390 aa18.27■□□□□ 0.52
CLN3-211ENST00000564091 TRIP11Q15643 1979 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 TBCAO75347 108 aaKnown RBP18.26■□□□□ 0.51
CLN3-211ENST00000564091 SCP2P22307 547 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 TGM1P22735 817 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 CXCL12P48061 93 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 SLC39A12Q504Y0 691 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 WDR44Q5JSH3 913 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms