RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 RABGGTAQ92696 567 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 MMS19Q96T76 1030 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 AGPAT1Q99943 283 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.87□□□□□ -0.67
SMG1-208ENST00000563448 CYP3A43Q9HB55 503 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 TRMT1Q9NXH9 659 aaKnown RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 ADAMTS1Q9UHI8 967 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 NOCTQ9UK39 431 aaKnown RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 LRFN2Q9ULH4 789 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 PPP2R2CQ9Y2T4 447 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 SNX9Q9Y5X1 595 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 A0A0U1RQJ8 604 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 DDX3XO00571 662 aaKnown RBP eCLIP10.87□□□□□ -0.67
SMG1-208ENST00000563448 CHRNB2P17787 502 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 RPL9P32969 192 aaKnown RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 YWHAEP62258 255 aaKnown RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 CYP27A1Q02318 531 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 TUSC3Q13454 348 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 SLC18A3Q16572 532 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 SV2CQ496J9 727 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 NPAS4Q8IUM7 802 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 C3orf58Q8NDZ4 430 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 SLC30A5Q8TAD4 765 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 URGCPQ8TCY9 931 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 WHAMMQ8TF30 809 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 ATRIPQ8WXE1 791 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 DDX1Q92499 740 aaKnown RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 CASD1Q96PB1 797 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 TBC1D13Q9NVG8 400 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 GDAP2Q9NXN4 497 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 NENFQ9UMX5 172 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 PTPRDP23468 1912 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 NLRC5Q86WI3 1866 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 GBF1Q92538 1859 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 CCDC175P0C221 793 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 ACRP10323 421 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 TNFAIP3P21580 790 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 PDE6CP51160 858 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 DSC1Q08554 894 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 BMS1Q14692 1282 aaKnown RBP10.86□□□□□ -0.67
SMG1-208ENST00000563448 SOWAHAQ2M3V2 549 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 SMYD5Q6GMV2 418 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 CD300LGQ6UXG3 332 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 LIMS2Q7Z4I7 341 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 COLGALT2Q8IYK4 626 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 RPUSD2Q8IZ73 545 aaKnown RBP10.86□□□□□ -0.67
SMG1-208ENST00000563448 TWNKQ96RR1 684 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 MRPL45Q9BRJ2 306 aaKnown RBP10.86□□□□□ -0.67
SMG1-208ENST00000563448 HMGXB4Q9UGU5 601 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 NME7Q9Y5B8 376 aa10.86□□□□□ -0.67
SMG1-208ENST00000563448 ABHD14A-ACY1A0A1B0GW23 586 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 CILPO75339 1184 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 MMEP08473 750 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 ANXA13P27216 316 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 RAD23BP54727 409 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 BPIFB4P59827 614 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 FMO1Q01740 532 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 INCA1Q0VD86 236 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 ZNF394Q53GI3 561 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 TAF3Q5VWG9 929 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 C16orf59Q7L2K0 433 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 GLYCTKQ8IVS8 523 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 C7orf61Q8IZ16 206 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 DDX27Q96GQ7 796 aaKnown RBP10.85□□□□□ -0.67
SMG1-208ENST00000563448 PPP1R13BQ96KQ4 1090 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 UROC1Q96N76 676 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 PCDHB18PQ96TA0 734 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 ELOVL4Q9GZR5 314 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 IL23AQ9NPF7 189 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 KANSL3Q9P2N6 904 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 BARX2Q9UMQ3 279 aaPredicted RBP10.85□□□□□ -0.67
SMG1-208ENST00000563448 TFR2Q9UP52 801 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 ZSCAN12O43309 604 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 HOXA2O43364 376 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 ZNF500O60304 480 aaPredicted RBP10.85□□□□□ -0.67
SMG1-208ENST00000563448 UPP2O95045 317 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 PFKMP08237 780 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 GNA15P30679 374 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 NDST1P52848 882 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 KRT83P78385 493 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 CDR2Q01850 454 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 ORC1Q13415 861 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 PALB2Q86YC2 1186 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 ABI1Q8IZP0 508 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 SLC4A11Q8NBS3 891 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 KBTBD7Q8WVZ9 684 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 BADQ92934 168 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 SENP8Q96LD8 212 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 ZSWIM1Q9BR11 485 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 FAM124BQ9H5Z6 455 aaPredicted RBP10.85□□□□□ -0.67
SMG1-208ENST00000563448 NRDE2Q9H7Z3 1164 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 RNF216Q9NWF9 866 aaPredicted RBP10.85□□□□□ -0.67
SMG1-208ENST00000563448 DNAJB4Q9UDY4 337 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 PRKAG2Q9UGJ0 569 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 NAGPAQ9UK23 515 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 L1RE1Q9UN81 338 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 PCDHA13Q9Y5I0 950 aa10.85□□□□□ -0.67
SMG1-208ENST00000563448 RCCD1A6NED2 376 aa10.84□□□□□ -0.67
SMG1-208ENST00000563448 TBKBP1A7MCY6 615 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms