RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 SV2CQ496J9 727 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 CNNM4Q6P4Q7 775 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 EFCAB13Q8IY85 973 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 THEM5Q8N1Q8 247 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 GPD1LQ8N335 351 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 TMEM105Q8N8V8 129 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 LEMD2Q8NC56 503 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 ST13P5Q8NFI4 369 aaPredicted RBP18.2■□□□□ 0.5
CLK3-210ENST00000563112 GPR152Q8TDT2 470 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 MCRS1Q96EZ8 462 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 ZNF560Q96MR9 790 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 PGLYRP2Q96PD5 576 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 C7orf25Q9BPX7 421 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 RTP3Q9BQQ7 232 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 CBWD1Q9BRT8 395 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 FGFBP2Q9BYJ0 223 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 PCIF1Q9H4Z3 704 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 SLC2A4RGQ9NR83 387 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 RCOR1Q9UKL0 485 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 CA14Q9ULX7 337 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 CACNA1HO95180 2353 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 NOTCH4Q99466 2003 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 GOLGA8IPA6NC78 632 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 GOLGA8JA6NMD2 632 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 EIF3DO15371 548 aaKnown RBP eCLIP18.19■□□□□ 0.5
CLK3-210ENST00000563112 GALR2O43603 387 aaPredicted RBP18.19■□□□□ 0.5
CLK3-210ENST00000563112 MICAL2O94851 1124 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 CYP11A1P05108 521 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 AOC1P19801 751 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 HOXD11P31277 338 aaPredicted RBP18.19■□□□□ 0.5
CLK3-210ENST00000563112 ALDH1A3P47895 512 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 EPHB3P54753 998 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 SLC5A9Q2M3M2 681 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 FAM26FQ5R3K3 315 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 RESP18Q5W5W9 173 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 ASAH2Q9NR71 780 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 R3HCC1Q9Y3T6 440 aaKnown RBP18.19■□□□□ 0.5
CLK3-210ENST00000563112 YIPF1Q9Y548 306 aa18.19■□□□□ 0.5
CLK3-210ENST00000563112 SCN1AP35498 2009 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 KPNA7A9QM74 516 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 MYL4P12829 197 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 NPR3P17342 541 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 CEBPBP17676 345 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 TCF15Q12870 199 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 DUSP4Q13115 394 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 SURF1Q15526 300 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 CENPPQ6IPU0 288 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 UNC13DQ70J99 1090 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 CEP57L1Q8IYX8 460 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 ZSWIM2Q8NEG5 633 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 HPS3Q969F9 1004 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 RPP25Q9BUL9 199 aaKnown RBP18.18■□□□□ 0.5
CLK3-210ENST00000563112 CEP72Q9P209 647 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 WDFY4Q6ZS81 3184 aa18.18■□□□□ 0.5
CLK3-210ENST00000563112 KRBA1A5PL33 1030 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 ZNF233A6NK53 670 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 ECI2O75521 394 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 TMEM191BP0C7N4 346 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 GPC5P78333 572 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 PFKPQ01813 784 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 PRSS36Q5K4E3 855 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 CWF19L1Q69YN2 538 aaKnown RBP18.17■□□□□ 0.5
CLK3-210ENST00000563112 ZNF507Q8TCN5 953 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 SHDQ96IW2 340 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 KXD1Q9BQD3 176 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 KIAA1586Q9HCI6 787 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 ARHGEF3Q9NR81 526 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 HSFX1Q9UBD0 423 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 ITGA11Q9UKX5 1188 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 AGAP1Q9UPQ3 857 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 ASB3Q9Y575 518 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 TCHHQ07283 1943 aa18.17■□□□□ 0.5
CLK3-210ENST00000563112 PVALEFA0A1B0GWK0 134 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 MTMR11A4FU01 709 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 ITGB3P05106 788 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 POLR2BP30876 1174 aaKnown RBP18.16■□□□□ 0.5
CLK3-210ENST00000563112 AFMP43652 599 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 TUFMP49411 452 aaKnown RBP18.16■□□□□ 0.5
CLK3-210ENST00000563112 SMARCB1Q12824 385 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 WSCD1Q658N2 575 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 EPM2AIP1Q7L775 607 aaPredicted RBP18.16■□□□□ 0.5
CLK3-210ENST00000563112 ALYREFQ86V81 257 aaKnown RBP18.16■□□□□ 0.5
CLK3-210ENST00000563112 DCP1BQ8IZD4 617 aaKnown RBP18.16■□□□□ 0.5
CLK3-210ENST00000563112 HS6ST3Q8IZP7 471 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 CSGALNACT2Q8N6G5 542 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 ATAD1Q8NBU5 361 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 GLIS3Q8NEA6 775 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 ATOH1Q92858 354 aaPredicted RBP18.16■□□□□ 0.5
CLK3-210ENST00000563112 TCEAL4Q96EI5 215 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 ANKRD36BP1Q96IX9 119 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 ZCWPW1Q9H0M4 648 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 BLZF1Q9H2G9 400 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 TBC1D17Q9HA65 648 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 PDE11AQ9HCR9 933 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 SLC27A5Q9Y2P5 690 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 UBE4BO95155 1302 aa18.16■□□□□ 0.5
CLK3-210ENST00000563112 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.15■□□□□ 0.5
CLK3-210ENST00000563112 PI15O43692 258 aa18.15■□□□□ 0.5
CLK3-210ENST00000563112 HUS1O60921 280 aa18.15■□□□□ 0.5
CLK3-210ENST00000563112 VNN2O95498 520 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms