RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 DDX43Q9NXZ2 648 aaKnown RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 ARMCX3Q9UH62 379 aaPredicted RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 SUN2Q9UH99 717 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 RPL26L1Q9UNX3 145 aaKnown RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 ZHX2Q9Y6X8 837 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 WDR46O15213 610 aaKnown RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 GAS7O60861 476 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 RNASEH1O60930 286 aaKnown RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 ICAM1P05362 532 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 PTPRAP18433 802 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 GALK1P51570 392 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 PHEXP78562 749 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 SULT2A1Q06520 285 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 PPP2R5CQ13362 524 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 SATL1Q86VE3 508 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 PALB2Q86YC2 1186 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 MAP7D3Q8IWC1 876 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 ZC3H15Q8WU90 426 aaKnown RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 LPAR1Q92633 364 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 SLC5A5Q92911 643 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 GRAMD1AQ96CP6 724 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 HES6Q96HZ4 224 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 CEP63Q96MT8 703 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 BCAS3Q9H6U6 928 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 ZNF536O15090 1300 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 NFIBO00712 420 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 TBCAO75347 108 aaKnown RBP14.05□□□□□ -0.16
CLK3-206ENST00000562078 PABPC4LP0CB38 370 aaKnown RBP14.05□□□□□ -0.16
CLK3-206ENST00000562078 KRT13P13646 458 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 ERFP50548 548 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 ADARP55265 1226 aaKnown RBP14.05□□□□□ -0.16
CLK3-206ENST00000562078 LMNB2Q03252 620 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 MAPK7Q13164 816 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 CFAP157Q5JU67 520 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 IZUMO2Q6UXV1 221 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 RFX8Q6ZV50 586 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 TPH2Q8IWU9 490 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 ZNF280CQ8ND82 737 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.05□□□□□ -0.16
CLK3-206ENST00000562078 CATSPER2Q96P56 530 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 OLFM3Q96PB7 478 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 STX18Q9P2W9 335 aaKnown RBP14.05□□□□□ -0.16
CLK3-206ENST00000562078 CLEC11AQ9Y240 323 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 NUMBLQ9Y6R0 609 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 WDR90Q96KV7 1748 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 BOLA2-SMG1P6H3BVE0 249 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 USP2O75604 605 aaPredicted RBP14.05□□□□□ -0.16
CLK3-206ENST00000562078 ARP10275 920 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 MOGSQ13724 837 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 SH3D19Q5HYK7 790 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 SLFN11Q7Z7L1 901 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 SLC15A3Q8IY34 581 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 CPXCR1Q8N123 301 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 HSD17B14Q9BPX1 270 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 ZNF577Q9BSK1 485 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 BRD8Q9H0E9 1235 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 METTL14Q9HCE5 456 aaKnown RBP14.05□□□□□ -0.16
CLK3-206ENST00000562078 HOMER2Q9NSB8 354 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 COL20A1Q9P218 1284 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 MTRF1LQ9UGC7 380 aaKnown RBP14.05□□□□□ -0.16
CLK3-206ENST00000562078 TBK1Q9UHD2 729 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 PHTF1Q9UMS5 762 aa14.05□□□□□ -0.16
CLK3-206ENST00000562078 RLFQ13129 1914 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 DOCK5Q9H7D0 1870 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 TRIM43BA6NCK2 446 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 FAM187AA6NFU0 413 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 ANKRD63C9JTQ0 380 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 ZBTB39O15060 712 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 EXOC3O60645 756 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 RARGP13631 454 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 OXCT1P55809 520 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 AADACL2Q6P093 401 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 ALKBH5Q6P6C2 394 aaKnown RBP14.04□□□□□ -0.16
CLK3-206ENST00000562078 KCNN1Q92952 543 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 STMN2Q93045 179 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 CDCA5Q96FF9 252 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 TUFT1Q9NNX1 390 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 NAGPAQ9UK23 515 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 TDRKHQ9Y2W6 561 aaKnown RBP14.04□□□□□ -0.16
CLK3-206ENST00000562078 ZNF711Q9Y462 761 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 UMODL1Q5DID0 1318 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 OPHN1O60890 802 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 DCTN3O75935 186 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 SLITRK3O94933 977 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 POTEJP0CG39 1038 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 PYGMP11217 842 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 VCAM1P19320 739 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 NR2F2P24468 414 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 MLH1P40692 756 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 HSD17B4P51659 736 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 BACE1P56817 501 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 SRRM1Q8IYB3 904 aaKnown RBP14.04□□□□□ -0.16
CLK3-206ENST00000562078 ST13P4Q8IZP2 240 aaPredicted RBP14.04□□□□□ -0.16
CLK3-206ENST00000562078 IL31RAQ8NI17 732 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 ROPN1BQ9BZX4 212 aaPredicted RBP14.04□□□□□ -0.16
CLK3-206ENST00000562078 UNC45AQ9H3U1 944 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 SYNCQ9H7C4 482 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 ROPN1Q9HAT0 212 aaPredicted RBP14.04□□□□□ -0.16
CLK3-206ENST00000562078 DDX18Q9NVP1 670 aaKnown RBP14.04□□□□□ -0.16
CLK3-206ENST00000562078 PKD2L1Q9P0L9 805 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms