RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 UHRF1Q96T88 793 aaPredicted RBP9.21□□□□□ -0.94
USP3-217ENST00000560070 NUP62CLQ9H1M0 184 aa9.21□□□□□ -0.94
USP3-217ENST00000560070 CYP4F11Q9HBI6 524 aa9.21□□□□□ -0.94
USP3-217ENST00000560070 NXF1Q9UBU9 619 aaKnown RBP9.21□□□□□ -0.94
USP3-217ENST00000560070 SLC27A5Q9Y2P5 690 aa9.21□□□□□ -0.94
USP3-217ENST00000560070 ARID2Q68CP9 1835 aa9.21□□□□□ -0.94
USP3-217ENST00000560070 FSD2A1L4K1 749 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 WDR27A2RRH5 827 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 PRRG1O14668 218 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 HCRTO43612 131 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 TBC1D4O60343 1298 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 SOAT2O75908 522 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 OAZ2O95190 189 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 C4BPAP04003 597 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 ACAT1P24752 427 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 SSTR3P32745 418 aaPredicted RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 PNPLA4P41247 253 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 AARSP49588 968 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP3-217ENST00000560070 NTHL1P78549 312 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 FKBP3Q00688 224 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 ROR1Q01973 937 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 PPP3CAQ08209 521 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 ADCY1Q08828 1119 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 SMAD4Q13485 552 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 MYBPC2Q14324 1141 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 EDRF1Q3B7T1 1238 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 PUS10Q3MIT2 529 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 WDR72Q3MJ13 1102 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 SLC39A12Q504Y0 691 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 ZCWPW2Q504Y3 356 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 PPM1LQ5SGD2 360 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 C1orf220Q5T0J3 134 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 LIN9Q5TKA1 542 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 TDRD10Q5VZ19 366 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 ZNF280DQ6N043 979 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 SV2AQ7L0J3 742 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 PDCL2Q8N4E4 241 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 LRRC52Q8N7C0 313 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 SMRP1Q8NCR6 262 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 ST13P5Q8NFI4 369 aaPredicted RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 SLC7A14Q8TBB6 771 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 TMC2Q8TDI7 906 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 SMG7Q92540 1137 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 DHTKD1Q96HY7 919 aaPredicted RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 ZNF560Q96MR9 790 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 DUSP9Q99956 384 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 LPIN3Q9BQK8 851 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 PI4K2AQ9BTU6 479 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 SRRTQ9BXP5 876 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 COL25A1Q9BXS0 654 aaPredicted RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 GTPBP4Q9BZE4 634 aaKnown RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 ADAM7Q9H2U9 754 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 DZANK1Q9NVP4 752 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 L1RE1Q9UN81 338 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 FAM50BQ9Y247 325 aa9.2□□□□□ -0.94
USP3-217ENST00000560070 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.2□□□□□ -0.94
USP3-217ENST00000560070 DLL1O00548 723 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 ATP2C2O75185 946 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 ZMYND10O75800 440 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 VNN1O95497 513 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 C8AP07357 584 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 EPB41P11171 864 aaKnown RBP9.19□□□□□ -0.94
USP3-217ENST00000560070 TYMPP19971 482 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 PAX3P23760 479 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 LMO2P25791 158 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 CDH8P55286 799 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 DUSP4Q13115 394 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 NCOA4Q13772 614 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 SMAD2Q15796 467 aaKnown RBP9.19□□□□□ -0.94
USP3-217ENST00000560070 SOWAHAQ2M3V2 549 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 CCDC40Q4G0X9 1142 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 COBLL1Q53SF7 1204 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 DCAF17Q5H9S7 520 aaPredicted RBP9.19□□□□□ -0.94
USP3-217ENST00000560070 SPOPLQ6IQ16 392 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 SLC8B1Q6J4K2 584 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 ELMSAN1Q6PJG2 1045 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 SCARA5Q6ZMJ2 495 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 GRASPQ7Z6J2 395 aaPredicted RBP9.19□□□□□ -0.94
USP3-217ENST00000560070 GPR149Q86SP6 731 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 LRRTM3Q86VH5 581 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 OSTM1Q86WC4 334 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 GPR65Q8IYL9 337 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 ATAD1Q8NBU5 361 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 OR10T2Q8NGX3 314 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 ZNF461Q8TAF7 563 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 RIPOR3Q96MK2 946 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 RTP3Q9BQQ7 232 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 SNX25Q9H3E2 840 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 PLEKHA4Q9H4M7 779 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 POMKQ9H5K3 350 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 SFXN1Q9H9B4 322 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 CD320Q9NPF0 282 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 DDX43Q9NXZ2 648 aaKnown RBP9.19□□□□□ -0.94
USP3-217ENST00000560070 DPP7Q9UHL4 492 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 DSEQ9UL01 958 aa9.19□□□□□ -0.94
USP3-217ENST00000560070 CHD7Q9P2D1 2997 aa9.18□□□□□ -0.94
USP3-217ENST00000560070 ARHGEF37A1IGU5 675 aa9.18□□□□□ -0.94
USP3-217ENST00000560070 OR6C75A6NL08 312 aa9.18□□□□□ -0.94
USP3-217ENST00000560070 LRRN2O75325 713 aa9.18□□□□□ -0.94
USP3-217ENST00000560070 ABLIM3O94929 683 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms