RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 TJP3O95049 919 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 ZWINTO95229 277 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 NPTX2P47972 431 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 VPS41P49754 854 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 CLDN10P78369 228 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 KRT76Q01546 638 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 C1QBPQ07021 282 aaKnown RBP17.23■□□□□ 0.35
SHMT2-232ENST00000557487 BRDTQ58F21 947 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-232ENST00000557487 FAM102BQ5T8I3 360 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 FYB2Q5VWT5 728 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 PLEKHA7Q6IQ23 1121 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 FAM47EQ6ZV65 393 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 SUPT20HQ8NEM7 779 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 ACER1Q8TDN7 264 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 TDRD3Q9H7E2 651 aaKnown RBP17.23■□□□□ 0.35
SHMT2-232ENST00000557487 KMT5AQ9NQR1 393 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 IP6K2Q9UHH9 426 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 ZBTB21Q9ULJ3 1066 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 DENND3A2RUS2 1198 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 WDR64B1ANS9 1081 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 C2CD2LO14523 706 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 ECE2O60344 883 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 KRT15P19012 456 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 GCAP28676 217 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 RTP1P59025 263 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 GRIK3Q13003 919 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 MTMR1Q13613 665 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 CYP4F22Q6NT55 531 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 MIS18BP1Q6P0N0 1132 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 PCGF5Q86SE9 256 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 LMNTD2Q8IXW0 634 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 ZNF784Q8NCA9 323 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-232ENST00000557487 ARMC2Q8NEN0 867 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 C10orf82Q8WW14 230 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 POMGNT1Q8WZA1 660 aa17.22■□□□□ 0.35
SHMT2-232ENST00000557487 PAIP2Q9BPZ3 127 aaKnown RBP17.22■□□□□ 0.35
SHMT2-232ENST00000557487 PSMC3IPQ9P2W1 217 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-232ENST00000557487 DKC1O60832 514 aaKnown RBP eCLIP17.21■□□□□ 0.35
SHMT2-232ENST00000557487 NFX1Q12986 1120 aaKnown RBP17.21■□□□□ 0.35
SHMT2-232ENST00000557487 DNAJC3Q13217 504 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 MAMLD1Q13495 774 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 XKR9Q5GH70 373 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 HHATQ5VTY9 493 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 CENPUQ71F23 418 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.21■□□□□ 0.352e-6■■■■■ 41.4
SHMT2-232ENST00000557487 ALLCQ8N6M5 410 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 CPA5Q8WXQ8 436 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 ALKBH8Q96BT7 664 aaKnown RBP17.21■□□□□ 0.35
SHMT2-232ENST00000557487 SPDL1Q96EA4 605 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 HEMGNQ9BXL5 484 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 ZNF646O15015 1829 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-232ENST00000557487 SMCHD1A6NHR9 2005 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 A6NHS1 94 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 PEX11AO75192 247 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 PTPN4P29074 926 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 LLGL1Q15334 1064 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 CDCA2Q69YH5 1023 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-232ENST00000557487 ABRAQ8N0Z2 381 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 FAM13CQ8NE31 585 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 PWWP2AQ96N64 755 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 FRMD8P1Q9BZ68 369 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-232ENST00000557487 CYLDQ9NQC7 956 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 ZNF277Q9NRM2 450 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-232ENST00000557487 PARVAQ9NVD7 372 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 CCPG1Q9ULG6 757 aa17.21■□□□□ 0.35
SHMT2-232ENST00000557487 GOLGB1Q14789 3259 aaKnown RBP17.2■□□□□ 0.34
SHMT2-232ENST00000557487 FOXO6A8MYZ6 492 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 SMAPO00193 183 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 TYROBPO43914 113 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 TPBGLP0DKB5 382 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 TROVE2P10155 538 aaKnown RBP eCLIP17.2■□□□□ 0.34
SHMT2-232ENST00000557487 TSHRP16473 764 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 CA4P22748 312 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 PHBP35232 272 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 NOMO3P69849 1222 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 MRPS35P82673 323 aaKnown RBP17.2■□□□□ 0.34
SHMT2-232ENST00000557487 PSMD6Q15008 389 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 TSNAXIP1Q2TAA8 658 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 SEPT14Q6ZU15 432 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 FEZF2Q8TBJ5 459 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 MICAL1Q8TDZ2 1067 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 SLC7A6OSQ96CW6 309 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-232ENST00000557487 SENP7Q9BQF6 1050 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 GPRC5CQ9NQ84 441 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.2■□□□□ 0.343e-6■■■■■ 44
SHMT2-232ENST00000557487 TOPORSQ9NS56 1045 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-232ENST00000557487 UTRNP46939 3433 aa17.2■□□□□ 0.34
SHMT2-232ENST00000557487 ATP6V1C1P21283 382 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 GCKP35557 465 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 TAS2R40P59535 323 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 SATB1Q01826 763 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 ZACNQ401N2 412 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 EFHC2Q5JST6 749 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 KCNN1Q92952 543 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 NKD2Q969F2 451 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-232ENST00000557487 TBC1D10AQ9BXI6 508 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 KIAA1683Q9H0B3 1180 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 DCLRE1BQ9H816 532 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 PCDH9Q9HC56 1237 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 PKD2L1Q9P0L9 805 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms