RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ELMO3Q96BJ8 720 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 CYP4F11Q9HBI6 524 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 DMAC2Q9NW81 257 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 DPP7Q9UHL4 492 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 CIZ1Q9ULV3 898 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 CLUHO75153 1309 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 DENND4AQ7Z401 1863 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 NOTCH4Q99466 2003 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 DOCK8Q8NF50 2099 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 PRRG1O14668 218 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 EXOC3O60645 756 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 SOAT2O75908 522 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 CST3P01034 146 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 MYL1P05976 194 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 TMEM191BP0C7N4 346 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 ODC1P11926 461 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 CPB1P15086 417 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 ATF2P15336 505 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 TYMPP19971 482 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 PSMD6Q15008 389 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 CCDC142Q17RM4 750 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 ELMSAN1Q6PJG2 1045 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 POTEHQ6S545 545 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 LRRTM3Q86VH5 581 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 NT5DC4Q86YG4 428 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 C12orf56Q8IXR9 622 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 ATAD1Q8NBU5 361 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 ITFG1Q8TB96 612 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 CACTINQ8WUQ7 758 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 RSAD2Q8WXG1 361 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 EEF2KMTQ96G04 330 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 KIAA1586Q9HCI6 787 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 DNMT3BQ9UBC3 853 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 AFF4Q9UHB7 1163 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 RAPGEFL1Q9UHV5 662 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 SLC27A5Q9Y2P5 690 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 NR2E1Q9Y466 385 aa12.49□□□□□ -0.41
CCDC88C-208ENST00000554165 NR3C1P04150 777 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 CYP11A1P05108 521 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 HNRNPA1P09651 372 aaKnown RBP eCLIP12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 GBP2P32456 591 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 ELF1P32519 619 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 DLG4P78352 724 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 RBP5P82980 135 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 DUSP4Q13115 394 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 KCNB1Q14721 858 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 DUOXA2Q1HG44 320 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 ISM2Q6H9L7 571 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 GET4Q7L5D6 327 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 TRAPPC11Q7Z392 1133 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 OSTM1Q86WC4 334 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 TCEAL8Q8IYN2 117 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 HS6ST3Q8IZP7 471 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 PDCL2Q8N4E4 241 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 ING5Q8WYH8 240 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 ANKRD36BP1Q96IX9 119 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 MFSD14AQ96MC6 490 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 CGRRF1Q99675 332 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 RHOBTB2Q9BYZ6 727 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 TMLHEQ9NVH6 421 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 CHMP5Q9NZZ3 219 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 CEP72Q9P209 647 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 ITGA11Q9UKX5 1188 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 L1RE1Q9UN81 338 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 PCDHA5Q9Y5H7 936 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 INSL5Q9Y5Q6 135 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 TSC2P49815 1807 aa12.48□□□□□ -0.41
CCDC88C-208ENST00000554165 ZDBF2Q9HCK1 2354 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 ARHGEF37A1IGU5 675 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 OR6C75A6NL08 312 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 PDXKO00764 312 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 XYLBO75191 536 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 TNNC2P02585 160 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 ALADP13716 330 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 TNNI1P19237 187 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 FSHRP23945 695 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 ACAT1P24752 427 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 HOXA9P31269 272 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 ANP32AP39687 249 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 SNRPFP62306 86 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 ZXDAP98168 799 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 TWF1Q12792 350 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 GPR17Q13304 367 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 PTPN21Q16825 1174 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 SLC5A9Q2M3M2 681 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 SOWAHAQ2M3V2 549 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 UVSSAQ2YD98 709 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 SV2CQ496J9 727 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 SLC39A12Q504Y0 691 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 TPGS2Q68CL5 300 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 CYP26C1Q6V0L0 522 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 OTOP3Q7RTS5 596 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 WDR49Q8IV35 697 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 ZDHHC14Q8IZN3 488 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 TCEAL4Q96EI5 215 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 HPDLQ96IR7 371 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 LRFN3Q9BTN0 628 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 CGNQ9P2M7 1197 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 USTQ9Y2C2 406 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms