RNA–Protein interactions for RNA: ENST00000554028.3

TMEM55B-205, human

TSL 2

Gene TMEM55B, Length 1,118 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM55B-205	ENST00000554028	CYP26A1	O43174	497 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ZSCAN12	O43309	604 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ACR	P10323	421 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	EIF4A3	P38919	411 aa	Known RBP	11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ASPA	P45381	313 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	OR1G1	P47890	313 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	CLCNKB	P51801	687 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	AFF1	P51825	1210 aa	Known RBP	11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	LILRA4	P59901	499 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	UPP1	Q16831	310 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ZSCAN30	Q86W11	494 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	METTL23	Q86XA0	190 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ZNF677	Q86XU0	584 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	LRRC43	Q8N309	656 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	RBBP8NL	Q8NC74	664 aa	Predicted RBP	11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TOP1MT	Q969P6	601 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ELMO3	Q96BJ8	720 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	CASD1	Q96PB1	797 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ARID3A	Q99856	593 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	GPR88	Q9GZN0	384 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	KCNF1	Q9H3M0	494 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	HAUS4	Q9H6D7	363 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TBC1D13	Q9NVG8	400 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ARHGAP20	Q9P2F6	1191 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	PUF60	Q9UHX1	559 aa	Known RBP	11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	DSE	Q9UL01	958 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	KIAA1257	Q9ULG3	409 aa		11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	EPN1	Q9Y6I3	576 aa	Predicted RBP	11.18	□□□□□ -0.62
TMEM55B-205	ENST00000554028	SOWAHD	A6NJG2	315 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	SPDYE4	A6NLX3	237 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	EIF3CL	B5ME19	914 aa	Known RBP	11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	PPEF2	O14830	753 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	MED7	O43513	233 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TACC1	O75410	805 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TADA2A	O75478	443 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	NDUFA10	O95299	355 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	PAEP	P09466	180 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	CCDC175	P0C221	793 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	PNMA6A	P0CW24	399 aa	Predicted RBP	11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ODC1	P11926	461 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ACO1	P21399	889 aa	Known RBP	11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	WDR5	P61964	334 aa	Known RBP	11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	BMS1	Q14692	1282 aa	Known RBP	11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	NAB2	Q15742	525 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TCTN1	Q2MV58	587 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	SPOUT1	Q5T280	376 aa	Known RBP	11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	C10orf76	Q5T2E6	689 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ZNF365	Q70YC5	407 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	OTOP2	Q7RTS6	562 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	UNC93A	Q86WB7	457 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TMEM139	Q8IV31	216 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TMEM86A	Q8N2M4	240 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TOP6BL	Q8N6T0	577 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	OR6B3	Q8NGW1	331 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	EIF3C	Q99613	913 aa	Known RBP	11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	AGPAT1	Q99943	283 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TMEM175	Q9BSA9	504 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ZBED2	Q9BTP6	218 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	NT5C1A	Q9BXI3	368 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	SMYD3	Q9H7B4	428 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	SEPT11	Q9NVA2	429 aa	Known RBP	11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	BARX2	Q9UMQ3	279 aa	Predicted RBP	11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	CNTN6	Q9UQ52	1028 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	FAN1	Q9Y2M0	1017 aa		11.17	□□□□□ -0.62
TMEM55B-205	ENST00000554028	CENPF	P49454	3210 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028		A8MXQ7	604 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	THAP12	O43422	761 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	DGKI	O75912	1065 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	DDHD2	O94830	711 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	KIF4A	O95239	1232 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	CD19	P15391	556 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	CYP11B1	P15538	503 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	SYN1	P17600	705 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	GNA15	P30679	374 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	CLCN1	P35523	988 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	GNL1	P36915	607 aa	Predicted RBP	11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	RAP1GAP	P47736	663 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	LHX1	P48742	406 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ALDH7A1	P49419	539 aa	Known RBP	11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	KIF11	P52732	1056 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	CDH8	P55286	799 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	DSC1	Q08554	894 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ZNF394	Q53GI3	561 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	E4F1	Q66K89	784 aa	Predicted RBP	11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	HGSNAT	Q68CP4	663 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	SCARA3	Q6AZY7	606 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	PPP1R2P3	Q6NXS1	205 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	KIAA1328	Q86T90	577 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ZNF280B	Q86YH2	543 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	GPIHBP1	Q8IV16	184 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	COLGALT2	Q8IYK4	626 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	ADGRF2	Q8IZF7	708 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	THEM5	Q8N1Q8	247 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	SPATA18	Q8TC71	538 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TMEM176A	Q96HP8	235 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	TNIP3	Q96KP6	325 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	SENP8	Q96LD8	212 aa		11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	HEXIM2	Q96MH2	286 aa	Known RBP	11.16	□□□□□ -0.62
TMEM55B-205	ENST00000554028	YME1L1	Q96TA2	773 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms