RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CEP57Q86XR8 500 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 PDCL2Q8N4E4 241 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 TOP6BLQ8N6T0 577 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 APPL2Q8NEU8 664 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 GDPD5Q8WTR4 605 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 TATDN2Q93075 761 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 NT5C1BQ96P26 610 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 MMS19Q96T76 1030 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 TCF25Q9BQ70 676 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 TTPALQ9BTX7 342 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 NIF3L1Q9GZT8 377 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 ZBP1Q9H171 429 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 TLR9Q9NR96 1032 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 DSEQ9UL01 958 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 L1RE1Q9UN81 338 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 TIMM13Q9Y5L4 95 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-209ENST00000553949 KIAA1671Q9BY89 1806 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 TEX33O43247 280 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 LPXNO60711 386 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 CYP11A1P05108 521 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 URODP06132 367 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 CTSAP10619 480 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 UBASH3AP57075 661 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 ERVFC1P60507 584 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 DSG1Q02413 1049 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 GRIN2CQ14957 1233 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 NR1I3Q14994 352 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 SOWAHAQ2M3V2 549 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 VARS2Q5ST30 1063 aaKnown RBP13.12□□□□□ -0.31
SHMT2-209ENST00000553949 KIAA0319Q5VV43 1072 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 WSCD1Q658N2 575 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 SCARA5Q6ZMJ2 495 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 DPH6Q7L8W6 267 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 LIMS2Q7Z4I7 341 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 METTL23Q86XA0 190 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 TMEM86AQ8N2M4 240 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 RIN2Q8WYP3 895 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-209ENST00000553949 FAXDC2Q96IV6 333 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 LMAN2LQ9H0V9 348 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 SMYD3Q9H7B4 428 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 MRPL17Q9NRX2 175 aaKnown RBP13.12□□□□□ -0.31
SHMT2-209ENST00000553949 IFNKQ9P0W0 207 aa13.12□□□□□ -0.31
SHMT2-209ENST00000553949 CDH23Q9H251 3354 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 C2CD2LO14523 706 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 FSCN2O14926 492 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 TACC1O75410 805 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 OAZ2O95190 189 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 CSPG5O95196 566 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 FAM163BP0C2L3 166 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 IRS1P35568 1242 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 RAP1GAPP47736 663 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 APBA1Q02410 837 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 YWHAHQ04917 246 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-209ENST00000553949 CUL2Q13617 745 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 MRPL58Q14197 206 aaKnown RBP13.11□□□□□ -0.31
SHMT2-209ENST00000553949 SMC1AQ14683 1233 aaKnown RBP13.11□□□□□ -0.31
SHMT2-209ENST00000553949 BMS1Q14692 1282 aaKnown RBP13.11□□□□□ -0.31
SHMT2-209ENST00000553949 SYCP1Q15431 976 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 PTPN14Q15678 1187 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 PTPROQ16827 1216 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 OVOS1Q6IE37 1185 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 PHLDB3Q6NSJ2 640 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 GPR153Q6NV75 609 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 PDXDC1Q6P996 788 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 PRSS55Q6UWB4 352 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-209ENST00000553949 ANKS3Q6ZW76 656 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 TMC7Q7Z402 723 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 GPR65Q8IYL9 337 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 ADGRF2Q8IZF7 708 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 LNX1Q8TBB1 728 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-209ENST00000553949 SPATA18Q8TC71 538 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 MICAL1Q8TDZ2 1067 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 KBTBD7Q8WVZ9 684 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 AUTS2Q8WXX7 1259 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 PIK3R5Q8WYR1 880 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 ERGIC2Q96RQ1 377 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 MRPL45Q9BRJ2 306 aaKnown RBP13.11□□□□□ -0.31
SHMT2-209ENST00000553949 LSM14BQ9BX40 385 aaKnown RBP13.11□□□□□ -0.31
SHMT2-209ENST00000553949 BCO2Q9BYV7 579 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 SDCBP2Q9H190 292 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 PRDM12Q9H4Q4 367 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 CYP3A43Q9HB55 503 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 SIX2Q9NPC8 291 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 NGRNQ9NPE2 291 aaKnown RBP13.11□□□□□ -0.31
SHMT2-209ENST00000553949 ENTPD7Q9NQZ7 604 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 APEX2Q9UBZ4 518 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 SSX2IPQ9Y2D8 614 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 SIK3Q9Y2K2 1263 aa13.11□□□□□ -0.31
SHMT2-209ENST00000553949 GABRDO14764 452 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 LILRB3O75022 631 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 CXCL14O95715 111 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 WEE2P0C1S8 567 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 WARSP23381 471 aaKnown RBP13.1□□□□□ -0.31
SHMT2-209ENST00000553949 TBXAS1P24557 533 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-209ENST00000553949 KLK7P49862 253 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 CDH8P55286 799 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 PLCB2Q00722 1185 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 GCNT1Q02742 428 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 PSMD5Q16401 504 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 PTPN21Q16825 1174 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms