RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 MIPOL1Q8TD10 442 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 TRPM4Q8TD43 1214 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 TMC2Q8TDI7 906 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 EPS8L3Q8TE67 593 aaKnown RBP12.99□□□□□ -0.33
SHMT2-207ENST00000553837 VTI1AQ96AJ9 217 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 C18orf8Q96DM3 657 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 C12orf42Q96LP6 360 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 FAM213AQ9BRX8 229 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 HAPLN2Q9GZV7 340 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 POLR3FQ9H1D9 316 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-207ENST00000553837 SEMA4AQ9H3S1 761 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 ETNK1Q9HBU6 452 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 CYP26B1Q9NR63 512 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 SLC9A2Q9UBY0 812 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 TRIM33Q9UPN9 1127 aa12.99□□□□□ -0.33
SHMT2-207ENST00000553837 SPATA31C2B4DYI2 1134 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 FZD9O00144 591 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 HNRNPDLO14979 420 aaKnown RBP12.98□□□□□ -0.33
SHMT2-207ENST00000553837 CYP1A2P05177 515 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 PSAPP07602 524 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 PYGMP11217 842 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 PTGIRP43119 386 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 SLCO1A2P46721 670 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 CDR2Q01850 454 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 TSNAXIP1Q2TAA8 658 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 DCAF15Q66K64 600 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 DLK2Q6UY11 383 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 CATSPERGQ6ZRH7 1159 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 CYFIP1Q7L576 1253 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 OTUD6AQ7L8S5 288 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 EXOC3L1Q86VI1 746 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 STK32AQ8WU08 396 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 ATP6V0A1Q93050 837 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 RUNDC3BQ96NL0 473 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 EPAS1Q99814 870 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 NUP85Q9BW27 656 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 VCXQ9H320 206 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 PICK1Q9NRD5 415 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.98□□□□□ -0.33
SHMT2-207ENST00000553837 ARHGAP28Q9P2N2 729 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 NKX1-2Q9UD57 310 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-207ENST00000553837 ZNF232Q9UNY5 417 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 SSC5DA1L4H1 1573 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 PTPRJQ12913 1337 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 PYGBP11216 843 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 ATP5DP30049 168 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 OAZ1P54368 228 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 RAD23BP54727 409 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 KLC1Q07866 573 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 SFSWAPQ12872 951 aaKnown RBP12.98□□□□□ -0.33
SHMT2-207ENST00000553837 MTERF2Q49AM1 385 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 LRRC23Q53EV4 343 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-207ENST00000553837 UBAP2Q5T6F2 1119 aaKnown RBP12.98□□□□□ -0.33
SHMT2-207ENST00000553837 SCARA3Q6AZY7 606 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 C15orf39Q6ZRI6 1047 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 AGGF1Q8N302 714 aaeCLIP12.98□□□□□ -0.33
SHMT2-207ENST00000553837 GPD1LQ8N335 351 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 CKAP2Q8WWK9 683 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 GRAMD1AQ96CP6 724 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 NT5C1BQ96P26 610 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 AS3MTQ9HBK9 375 aa12.98□□□□□ -0.33
SHMT2-207ENST00000553837 NFASCO94856 1347 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 EIF4E1BA6NMX2 242 aaKnown RBP12.97□□□□□ -0.33
SHMT2-207ENST00000553837 SPDYE16A6NNV3 312 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-207ENST00000553837 PODXLO00592 558 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 RIPK2O43353 540 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 DGAT1O75907 488 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 EDN1P05305 212 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 RARGP13631 454 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 ACADSP16219 412 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 CNTN2Q02246 1040 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 LRRC14Q15048 493 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 LLGL2Q6P1M3 1020 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 TSHZ1Q6ZSZ6 1077 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 ZNF564Q8TBZ8 553 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-207ENST00000553837 MGARPQ8TDB4 240 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 TMEM143Q96AN5 459 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 ZNF653Q96CK0 615 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 RPS6KC1Q96S38 1066 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 WDR35Q9P2L0 1181 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 C2CD2Q9Y426 696 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 TMEM120BA0PK00 339 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 SPDYE5A6NIY4 337 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 MIF4GDA9UHW6 222 aaKnown RBP12.97□□□□□ -0.33
SHMT2-207ENST00000553837 PDHA1P08559 390 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 CTNNA2P26232 953 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 RANBP1P43487 201 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 NLRP11P59045 1033 aaKnown RBP12.97□□□□□ -0.33
SHMT2-207ENST00000553837 ACVR2BQ13705 512 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 PRKG1Q13976 671 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 LLGL1Q15334 1064 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 SIX1Q15475 284 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-207ENST00000553837 BRDTQ58F21 947 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-207ENST00000553837 ZBTB41Q5SVQ8 909 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 TMEM154Q6P9G4 183 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.97□□□□□ -0.332e-6■■■■■ 41.4
SHMT2-207ENST00000553837 ATL2Q8NHH9 583 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 ASAP3Q8TDY4 903 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 KLRG1Q96E93 195 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 BICD1Q96G01 975 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms