RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 GPS1Q13098 491 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 FASTKD3Q14CZ7 662 aaKnown RBP18.54■□□□□ 0.56
SYNE3-202ENST00000553340 MORF4L2Q15014 288 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 EAPPQ56P03 285 aaPredicted RBP18.54■□□□□ 0.56
SYNE3-202ENST00000553340 ZFYVE27Q5T4F4 411 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 FYB2Q5VWT5 728 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 KAZNQ674X7 775 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 CCDC125Q86Z20 511 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 SH3TC2Q8TF17 1288 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 AGBL1Q96MI9 1066 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 ZFP69BQ9UJL9 534 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 TYROBPO43914 113 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 TJP3O95049 919 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 ZSCAN5DPP0CG00 497 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 CALRP27797 417 aaKnown RBP18.54■□□□□ 0.56
SYNE3-202ENST00000553340 DSG3P32926 999 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 PCK1P35558 622 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 RASA2Q15283 850 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 TAF1BQ53T94 588 aaPredicted RBP18.54■□□□□ 0.56
SYNE3-202ENST00000553340 DRICH1Q6PGQ1 229 aaPredicted RBP18.54■□□□□ 0.56
SYNE3-202ENST00000553340 CAPN12Q6ZSI9 719 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 OTOAQ7RTW8 1153 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 LMNTD2Q8IXW0 634 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 ZBED8Q8IZ13 594 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 RCOR2Q8IZ40 523 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 FBXO41Q8TF61 875 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 RBM41Q96IZ5 413 aaKnown RBP18.54■□□□□ 0.56
SYNE3-202ENST00000553340 FAM213AQ9BRX8 229 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 PSMC3IPQ9P2W1 217 aaPredicted RBP18.54■□□□□ 0.56
SYNE3-202ENST00000553340 USP21Q9UK80 565 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 C2CD2LO14523 706 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 HNRNPDLO14979 420 aaKnown RBP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ALOX15BO15296 676 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 HNRNPCL1O60812 293 aaKnown RBP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 KRT10P13645 584 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 PTPN4P29074 926 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 PLEKHA7Q6IQ23 1121 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 LVRNQ6Q4G3 990 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 C15orf39Q6ZRI6 1047 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 CENPUQ71F23 418 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 NLRP9Q7RTR0 991 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 PASD1Q8IV76 773 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ALLCQ8N6M5 410 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ZNF75CPQ92670 426 aaPredicted RBP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 SCN9AQ15858 1988 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ICAM1P05362 532 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ATF7P17544 494 aaPredicted RBP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ATP6V1C1P21283 382 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 NOMO3P69849 1222 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 MRPS9P82933 396 aaKnown RBP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 CMPK2Q5EBM0 449 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ZNF398Q8TD17 642 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 SPIRE2Q8WWL2 714 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ZNF622Q969S3 477 aaKnown RBP eCLIP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 MRRFQ96E11 262 aaKnown RBP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 CYLDQ9NQC7 956 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 SAR1AQ9NR31 198 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 KLHL11Q9NVR0 708 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 NFASCO94856 1347 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 A0A1W2PPM1 405 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 PI4K2BG5E9Z4 385 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 NFIBO00712 420 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 KIF3CO14782 793 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ZWINTO95229 277 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 PEX19P40855 299 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 JAK3P52333 1124 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 CCDC142Q17RM4 750 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 BRDTQ58F21 947 aaPredicted RBP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 ASAP3Q8TDY4 903 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 MASTLQ96GX5 879 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 FAM84AQ96KN4 292 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 NTPCRQ9BSD7 190 aaKnown RBP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 SSU72Q9NP77 194 aaKnown RBP18.53■□□□□ 0.56
SYNE3-202ENST00000553340 LNPEPQ9UIQ6 1025 aa18.53■□□□□ 0.56
SYNE3-202ENST00000553340 NDC80O14777 642 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 LMNAP02545 664 aaKnown RBP18.52■□□□□ 0.56
SYNE3-202ENST00000553340 GARTP22102 1010 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 MARK3P27448 753 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 TSNAXIP1Q2TAA8 658 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 PHF13Q86YI8 300 aaPredicted RBP18.52■□□□□ 0.56
SYNE3-202ENST00000553340 ABRAQ8N0Z2 381 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 FEZF2Q8TBJ5 459 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 ZNF516Q92618 1163 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 SLITRK1Q96PX8 696 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 SENP7Q9BQF6 1050 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 MAK16Q9BXY0 300 aaKnown RBP18.52■□□□□ 0.56
SYNE3-202ENST00000553340 DENND2DQ9H6A0 471 aaPredicted RBP18.52■□□□□ 0.56
SYNE3-202ENST00000553340 TLE6Q9H808 572 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 NPHS2Q9NP85 383 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 IP6K2Q9UHH9 426 aa18.52■□□□□ 0.56
SYNE3-202ENST00000553340 WDR64B1ANS9 1081 aa18.52■□□□□ 0.55
SYNE3-202ENST00000553340 TCP10L2B9ZVM9 353 aa18.52■□□□□ 0.55
SYNE3-202ENST00000553340 H0Y3Z8 333 aa18.52■□□□□ 0.55
SYNE3-202ENST00000553340 TROVE2P10155 538 aaKnown RBP eCLIP18.52■□□□□ 0.55
SYNE3-202ENST00000553340 ETS1P14921 441 aa18.52■□□□□ 0.55
SYNE3-202ENST00000553340 KRT4P19013 534 aa18.52■□□□□ 0.55
SYNE3-202ENST00000553340 PTDSS1P48651 473 aaKnown RBP18.52■□□□□ 0.55
SYNE3-202ENST00000553340 PDIA2Q13087 525 aaKnown RBP18.52■□□□□ 0.55
SYNE3-202ENST00000553340 SEPT7Q16181 437 aaKnown RBP18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms