RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CUL1Q13616 776 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 TMEM119Q4V9L6 283 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 CCDC38Q502W7 563 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ADSSL1Q8N142 457 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 RAD54LQ92698 747 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 IQCDQ96DY2 449 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ANKRD27Q96NW4 1050 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 XPO6Q96QU8 1125 aaKnown RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 PLCD4Q9BRC7 762 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 OSBPL1AQ9BXW6 950 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 FAM129AQ9BZQ8 928 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 NT5C3AQ9H0P0 336 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ISCUQ9H1K1 167 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 NKX2-4Q9H2Z4 354 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 SEMA6BQ9H3T3 888 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 XPNPEP1Q9NQW7 623 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 SUCLA2Q9P2R7 463 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 STK17AQ9UEE5 414 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ARID2Q68CP9 1835 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 A0A087WZ62 844 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ENPP3O14638 875 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ASAP2O43150 1006 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 AKR1B10O60218 316 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 DKC1O60832 514 aaKnown RBP eCLIP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 SMIM24O75264 130 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 KIF4AO95239 1232 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 GJB5O95377 273 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 CA3P07451 260 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 PLEKP08567 350 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 NQO1P15559 274 aaKnown RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 CRYBB1P53674 252 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 POLGP54098 1239 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 MAGOHP61326 146 aaKnown RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 LAMB3Q13751 1172 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 TRADDQ15628 312 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 UAP1Q16222 522 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 TBC1D25Q3MII6 688 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 FIGNQ5HY92 759 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ANKRD20A2Q5SQ80 823 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 HYIQ5T013 277 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ERMARDQ5T6L9 678 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ANKRD20A1Q5TYW2 823 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 KLHDC7AQ5VTJ3 777 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ANKRD20A3Q5VUR7 823 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 GPR153Q6NV75 609 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 MAEAQ7L5Y9 396 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 OTUD6AQ7L8S5 288 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 RHPN2Q8IUC4 686 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 APLFQ8IW19 511 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 PHOSPHO2Q8TCD6 241 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 UBLCP1Q8WVY7 318 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 PRPF31Q8WWY3 499 aaKnown RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 SLC7A3Q8WY07 619 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 LARP4BQ92615 738 aaKnown RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 MAGOHBQ96A72 148 aaKnown RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 CENPTQ96BT3 561 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 TIFAQ96CG3 184 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 SLC9A7Q96T83 725 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 C7orf25Q9BPX7 421 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 FDXACB1Q9BRP7 624 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 TUBGCP2Q9BSJ2 902 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 FAM167BQ9BTA0 163 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 POLR3CQ9BUI4 534 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-216ENST00000552909 MAGEF1Q9HAY2 307 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 TUFT1Q9NNX1 390 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 MTMR10Q9NXD2 777 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 SAMD15Q9P1V8 674 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 ST3GAL5Q9UNP4 418 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 DNM3Q9UQ16 869 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 STK24Q9Y6E0 443 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 C5orf42Q9H799 3197 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 MYMKA6NI61 221 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 PJA2O43164 708 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 RAD51CO43502 376 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 RPLP2P05387 115 aaKnown RBP8.16□□□□□ -1.1
LIMA1-216ENST00000552909 EIF4BP23588 611 aaKnown RBP8.16□□□□□ -1.1
LIMA1-216ENST00000552909 ABL2P42684 1182 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 MAGEA1P43355 309 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 GRIN2CQ14957 1233 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 EMC2Q15006 297 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 TAF11Q15544 211 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 FAM133BQ5BKY9 247 aaKnown RBP8.16□□□□□ -1.1
LIMA1-216ENST00000552909 DYMQ7RTS9 669 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 TRPM8Q7Z2W7 1104 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 RNF10Q8N5U6 811 aaKnown RBP8.16□□□□□ -1.1
LIMA1-216ENST00000552909 KLHL23Q8NBE8 558 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 NEK9Q8TD19 979 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 NLRP7Q8WX94 980 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 APBB2Q92870 758 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 TOP1MTQ969P6 601 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 NLRP4Q96MN2 994 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 TRIM9Q9C026 710 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 ZNF576Q9H609 170 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 CERS4Q9HA82 394 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 IFT122Q9HBG6 1241 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 ERVK-5Q9HDB9 667 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 GPRC5CQ9NQ84 441 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 ANKEF1Q9NU02 776 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 ARHGAP20Q9P2F6 1191 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 PLAGL2Q9UPG8 496 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms