RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TMC2Q8TDI7 906 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 DDX1Q92499 740 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ANKRD36BP1Q96IX9 119 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CCT8L2Q96SF2 557 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 OSMRQ99650 979 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GPR20Q99678 358 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ELAC2Q9BQ52 826 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 TRIM6Q9C030 488 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 C12orf65Q9H3J6 166 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 SLITRK6Q9H5Y7 841 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GOLGA2P5Q9HBQ8 144 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 SAYSD1Q9NPB0 183 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 DNPEPQ9ULA0 475 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 MAFBQ9Y5Q3 323 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 SNX9Q9Y5X1 595 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CAPN7Q9Y6W3 813 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PASKQ96RG2 1323 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 MCM3APO60318 1980 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 MYH9P35579 1960 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 A0A0A6YYK5 440 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 TULP2O00295 520 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 RASGRF2O14827 1237 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PPEF2O14830 753 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 EIF3HO15372 352 aaKnown RBP eCLIP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GRIN3BO60391 1043 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 TOM1L1O75674 476 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 IVLP07476 585 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 NEFHP12036 1026 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 OSBPP22059 807 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GJA5P36382 358 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 HSPA9P38646 679 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 OGDHQ02218 1023 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 MMRN1Q13201 1228 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 MAMLD1Q13495 774 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 TTLL4Q14679 1199 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 C15orf59Q2T9L4 293 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 P3H1Q32P28 736 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PAN2Q504Q3 1202 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 JADE1Q6IE81 842 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 NPNTQ6UXI9 565 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ACOT1Q86TX2 421 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 OTUD6BQ8N6M0 293 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CAVIN3Q969G5 261 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 KIF12Q96FN5 646 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 WNT8AQ9H1J5 351 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 TMBIM4Q9HC24 238 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 METTL5Q9NRN9 209 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 TMEM59LQ9UK28 342 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 INTUQ9ULD6 942 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CEP83Q9Y592 693 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 HEY1Q9Y5J3 304 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 LRRC37AA6NMS7 1700 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 MYO18AQ92614 2054 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 NCANO14594 1321 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 LAMA3Q16787 3333 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 MIF4GDA9UHW6 222 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 PDHXO00330 501 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 OGTO15294 1046 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 P4HA2O15460 535 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 FDX1P10109 184 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 GZMAP12544 262 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CHN1P15882 459 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 MDH1P40925 334 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 NOMO3P69849 1222 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 BBS9Q3SYG4 887 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CELF3Q5SZQ8 465 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 FAM102AQ5T9C2 384 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 IZUMO3Q5VZ72 239 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 DUPD1Q68J44 220 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 RUFY4Q6ZNE9 571 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CATSPER4Q7RTX7 472 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 ARMC9Q7Z3E5 817 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 SRLQ86TD4 932 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 NLRP14Q86W24 1093 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 RFX6Q8HWS3 928 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 OR6B3Q8NGW1 331 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 FEZF2Q8TBJ5 459 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 IPO4Q8TEX9 1081 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 VTI1AQ96AJ9 217 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CGRRF1Q99675 332 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 ACO2Q99798 780 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 PRMT1Q99873 361 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 NTPCRQ9BSD7 190 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CDT1Q9H211 546 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CDC42EP4Q9H3Q1 356 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CDHR5Q9HBB8 845 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 SNTG2Q9NY99 539 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 PCDHA3Q9Y5H8 950 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 TIMM13Q9Y5L4 95 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 MYO7AQ13402 2215 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 MSCO60682 206 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 STAM2O75886 525 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CYP1A2P05177 515 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 HOXA7P31268 230 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CHRNA3P32297 505 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CETN2P41208 172 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 PTGIRP43119 386 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 ARSEP51690 589 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms