RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ZBP1Q9H171 429 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 L1RE1Q9UN81 338 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 SZT2Q5T011 3432 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 C2CD2LO14523 706 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 ERVFC1P60507 584 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 APBA1Q02410 837 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 UBXN1Q04323 297 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 GRIN2CQ14957 1233 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 WSCD1Q658N2 575 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 KIAA1841Q6NSI8 718 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 AUTS2Q8WXX7 1259 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 TCF25Q9BQ70 676 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 TTPALQ9BTX7 342 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 PRDM12Q9H4Q4 367 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 SMYD3Q9H7B4 428 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 RTN4Q9NQC3 1192 aaKnown RBP22.73■■□□□ 1.23
VPS29-206ENST00000549578 TLR9Q9NR96 1032 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 CHST7Q9NS84 486 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 TSC2P49815 1807 aa22.73■■□□□ 1.23
VPS29-206ENST00000549578 A0A1B0GTH6 734 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 SYN3O14994 580 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 TEX33O43247 280 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 LPXNO60711 386 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 HUS1O60921 280 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 PON1P27169 355 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 GLUD2P49448 558 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 KCNMA1Q12791 1236 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 PTPN21Q16825 1174 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 SOWAHAQ2M3V2 549 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 FILIP1LQ4L180 1135 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 TRIM65Q6PJ69 517 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 TMC7Q7Z402 723 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 PDCL2Q8N4E4 241 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 APPL2Q8NEU8 664 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 NIF3L1Q9GZT8 377 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 STK39Q9UEW8 545 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 PCDHGC5Q9Y5F6 944 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 URODP06132 367 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 IRS1P35568 1242 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 ASPAP45381 313 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 RAP1GAPP47736 663 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 UBASH3AP57075 661 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 VARS2Q5ST30 1063 aaKnown RBP22.72■■□□□ 1.23
VPS29-206ENST00000549578 PRSS55Q6UWB4 352 aaPredicted RBP22.72■■□□□ 1.23
VPS29-206ENST00000549578 TOP6BLQ8N6T0 577 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 RIN2Q8WYP3 895 aaPredicted RBP22.72■■□□□ 1.23
VPS29-206ENST00000549578 NT5C1BQ96P26 610 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 ENTPD7Q9NQZ7 604 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 IFNKQ9P0W0 207 aa22.72■■□□□ 1.23
VPS29-206ENST00000549578 CYP11A1P05108 521 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 CTSAP10619 480 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 P4HA1P13674 534 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 TYMPP19971 482 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 CA8P35219 290 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 KLK7P49862 253 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 CDH8P55286 799 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 PLCB2Q00722 1185 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 DSG1Q02413 1049 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 SYCP1Q15431 976 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 KIAA0319Q5VV43 1072 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 PLPP4Q5VZY2 271 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 LIMS2Q7Z4I7 341 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 ARHGEF19Q8IW93 802 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 ADGRF2Q8IZF7 708 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 ARID3AQ99856 593 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 SDCBP2Q9H190 292 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 DSEQ9UL01 958 aa22.71■■□□□ 1.23
VPS29-206ENST00000549578 ARHGEF37A1IGU5 675 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 YWHAHQ04917 246 aaPredicted RBP22.7■■□□□ 1.22
VPS29-206ENST00000549578 NR1I3Q14994 352 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 OVOS1Q6IE37 1185 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 PHLDB3Q6NSJ2 640 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 Q7L0L9 218 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 RRAGAQ7L523 313 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 PPM1KQ8N3J5 372 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 MICAL1Q8TDZ2 1067 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 KBTBD7Q8WVZ9 684 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 MRPL45Q9BRJ2 306 aaKnown RBP22.7■■□□□ 1.22
VPS29-206ENST00000549578 LSM14BQ9BX40 385 aaKnown RBP22.7■■□□□ 1.22
VPS29-206ENST00000549578 SIX2Q9NPC8 291 aa22.7■■□□□ 1.22
VPS29-206ENST00000549578 MYO7AQ13402 2215 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 FSCN2O14926 492 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 CXCL14O95715 111 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 WEE2P0C1S8 567 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 PTPN14Q15678 1187 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 GJB7Q6PEY0 223 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 DPH6Q7L8W6 267 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 OSTM1Q86WC4 334 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 METTL23Q86XA0 190 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 LNX1Q8TBB1 728 aaPredicted RBP22.69■■□□□ 1.22
VPS29-206ENST00000549578 PIK3R5Q8WYR1 880 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 KAT5Q92993 513 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 BCO2Q9BYV7 579 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 XPO4Q9C0E2 1151 aaKnown RBP22.69■■□□□ 1.22
VPS29-206ENST00000549578 LMAN2LQ9H0V9 348 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 MRPL17Q9NRX2 175 aaKnown RBP22.69■■□□□ 1.22
VPS29-206ENST00000549578 SIK3Q9Y2K2 1263 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 ATG2AQ2TAZ0 1938 aa22.69■■□□□ 1.22
VPS29-206ENST00000549578 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.68■■□□□ 1.22
VPS29-206ENST00000549578 HIDE1A8MVS5 230 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms