RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ELF1P32519 619 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 TGFB2P61812 414 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 THOC5Q13769 683 aaKnown RBP17.14■□□□□ 0.33
CUX1-213ENST00000549414 FAM117BQ6P1L5 589 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 BZW1Q7L1Q6 419 aaKnown RBP17.14■□□□□ 0.33
CUX1-213ENST00000549414 NOP9Q86U38 636 aaKnown RBP17.14■□□□□ 0.33
CUX1-213ENST00000549414 XPO6Q96QU8 1125 aaKnown RBP17.14■□□□□ 0.33
CUX1-213ENST00000549414 P2RX7Q99572 595 aaKnown RBP17.14■□□□□ 0.33
CUX1-213ENST00000549414 TRIM55Q9BYV6 548 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 TMEM120BA0PK00 339 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 NPTXRO95502 500 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 HSPA9P38646 679 aaKnown RBP17.14■□□□□ 0.33
CUX1-213ENST00000549414 MAGEA4P43358 317 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 PPATQ06203 517 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 PID1Q7Z2X4 250 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 MRIQ9BWK5 157 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 KCTD10Q9H3F6 313 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 MYBL2P10244 700 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 SERPINB6P35237 376 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 STAT4Q14765 748 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 SLC35G1Q2M3R5 365 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 TRMT10CQ7L0Y3 403 aaKnown RBP17.13■□□□□ 0.33
CUX1-213ENST00000549414 TRIM42Q8IWZ5 723 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 TMC2Q8TDI7 906 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 APOL1O14791 398 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 HOXD10P28358 340 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 ERFP50548 548 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 DNAJC18Q9H819 358 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 MAP3K20Q9NYL2 800 aaKnown RBP17.13■□□□□ 0.33
CUX1-213ENST00000549414 FKBP1AP62942 108 aaKnown RBP17.13■□□□□ 0.33
CUX1-213ENST00000549414 FBXW10Q5XX13 1052 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 PHLDB3Q6NSJ2 640 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 KDELC2Q7Z4H8 507 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 ZNF677Q86XU0 584 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 ERO1BQ86YB8 467 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 FAM71DQ8N9W8 422 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 KRT35Q92764 455 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 SHISA4Q96DD7 197 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 CPB2Q96IY4 423 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 LBHD1Q9BQE6 289 aaPredicted RBP17.13■□□□□ 0.33
CUX1-213ENST00000549414 CISHQ9NSE2 258 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 CXCL8P10145 99 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 PTPRAP18433 802 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 HIPK4Q8NE63 616 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 GANQ9H2C0 597 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 PABPC3Q9H361 631 aaKnown RBP17.13■□□□□ 0.33
CUX1-213ENST00000549414 WDR35Q9P2L0 1181 aa17.13■□□□□ 0.33
CUX1-213ENST00000549414 YDJCA8MPS7 323 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 MEFVO15553 781 aaPredicted RBP17.12■□□□□ 0.33
CUX1-213ENST00000549414 PJA2O43164 708 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 PYGMP11217 842 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 TPD52P55327 224 aaPredicted RBP17.12■□□□□ 0.33
CUX1-213ENST00000549414 NR1H3Q13133 447 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 EFHC2Q5JST6 749 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 NT5DC3Q86UY8 548 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 HDAC11Q96DB2 347 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 ETNK1Q9HBU6 452 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 CPSF3Q9UKF6 684 aaKnown RBP17.12■□□□□ 0.33
CUX1-213ENST00000549414 TPX2Q9ULW0 747 aaKnown RBP17.12■□□□□ 0.33
CUX1-213ENST00000549414 ROBO3Q96MS0 1386 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 A0A087WZ62 844 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 TGFB1I1O43294 461 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 GMNNO75496 209 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 TSEN2Q8NCE0 465 aaKnown RBP17.12■□□□□ 0.33
CUX1-213ENST00000549414 GSDMBQ8TAX9 411 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 EXT2Q93063 718 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 ZNF560Q96MR9 790 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 FDXACB1Q9BRP7 624 aaPredicted RBP17.12■□□□□ 0.33
CUX1-213ENST00000549414 FGFR1OP2Q9NVK5 253 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 ASAP2O43150 1006 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 CAND2O75155 1236 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 ADRB2P07550 413 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 EPHX2P34913 555 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 GNASQ5JWF2 1037 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 LRRC31Q6UY01 552 aa17.12■□□□□ 0.33
CUX1-213ENST00000549414 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.12■□□□□ 0.333e-6■□□□□ 8.8
CUX1-213ENST00000549414 XPO7Q9UIA9 1087 aaKnown RBP17.12■□□□□ 0.33
CUX1-213ENST00000549414 COL1A1P02452 1464 aaPredicted RBP17.12■□□□□ 0.33
CUX1-213ENST00000549414 ATP9BO43861 1147 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 AFG1LQ8WV93 481 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 LRRC37BQ96QE4 947 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 CGRRF1Q99675 332 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 SEMA4AQ9H3S1 761 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 ZNF263O14978 683 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 ZBTB24O43167 697 aaPredicted RBP17.11■□□□□ 0.33
CUX1-213ENST00000549414 PPP1R13LQ8WUF5 828 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 TNIP3Q96KP6 325 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 LAMTOR4Q0VGL1 99 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 UGCGQ16739 394 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 GOLGA7BQ2TAP0 167 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 FKBP1CQ5VVH2 108 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 ACOT1Q86TX2 421 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 VSIG10LQ86VR7 867 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 APPL2Q8NEU8 664 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 A0A0A6YYK5 440 aaPredicted RBP17.11■□□□□ 0.33
CUX1-213ENST00000549414 PIK3CDO00329 1044 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 ZNF286BP0CG31 522 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 MYBPC2Q14324 1141 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 PTGISQ16647 500 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 MMEL1Q495T6 779 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms