RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NOTCH4Q99466 2003 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 SHISA7A6NL88 538 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 TM4SF5O14894 197 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 OFD1O75665 1012 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 DDAH1O94760 285 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 DDHD2O94830 711 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 URODP06132 367 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 BMP4P12644 408 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 SPINK2P20155 84 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 EPHA1P21709 976 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 CDC25BP30305 580 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 SLC26A2P50443 739 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 AFF1P51825 1210 aaKnown RBP7.32□□□□□ -1.24
LIMA1-204ENST00000549064 NTHL1P78549 312 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 HNRNPUQ00839 825 aaKnown RBP eCLIP7.32□□□□□ -1.24
LIMA1-204ENST00000549064 RNASELQ05823 741 aaKnown RBP7.32□□□□□ -1.24
LIMA1-204ENST00000549064 RING1Q06587 406 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 TROAPQ12815 778 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 SQSTM1Q13501 440 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 NOMO2Q5JPE7 1267 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 HGSNATQ68CP4 663 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 ABHD15Q6UXT9 468 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 PALB2Q86YC2 1186 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 RBBP8NLQ8NC74 664 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-204ENST00000549064 MAP4K1Q92918 833 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 PHKBQ93100 1093 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 CLDN23Q96B33 292 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 KXD1Q9BQD3 176 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 MXRA8Q9BRK3 442 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 RHOBTB2Q9BYZ6 727 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 NT5C3AQ9H0P0 336 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 SLKQ9H2G2 1235 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-204ENST00000549064 AGO4Q9HCK5 861 aaKnown RBP7.32□□□□□ -1.24
LIMA1-204ENST00000549064 ZNF302Q9NR11 478 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 RXFP3Q9NSD7 469 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.32□□□□□ -1.24
LIMA1-204ENST00000549064 PFDN2Q9UHV9 154 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 PCDHA6Q9UN73 950 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 PCDHA8Q9Y5H6 950 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 TDRD15B5MCY1 1934 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 TICRRQ7Z2Z1 1910 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 SPDYE3A6NKU9 549 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 F8W810 466 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 MAFGO15525 162 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 LRP3O75074 770 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 SOD2P04179 222 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 COL4A2P08572 1712 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 DARSP14868 501 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 MAGEA9P43362 315 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 RPS9P46781 194 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 NT5C2P49902 561 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 GPC3P51654 580 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 PDE1AP54750 535 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 SIM2Q14190 667 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 SF3A2Q15428 464 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 CCDC6Q16204 474 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 IMMTQ16891 758 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 MTERF2Q49AM1 385 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 AASDHQ4L235 1098 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 FAM160B1Q5W0V3 765 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 TWF2Q6IBS0 349 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 SWSAP1Q6NVH7 229 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 EFCAB12Q6NXP0 572 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 LRSAM1Q6UWE0 723 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 GLB1LQ6UWU2 654 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 CYP26C1Q6V0L0 522 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 GRASPQ7Z6J2 395 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 VWA5B2Q8N398 1253 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 CELF5Q8N6W0 485 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 LINC01465Q8N7H1 131 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 DDX1Q92499 740 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 RILPL2Q969X0 211 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 RRP36Q96EU6 259 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 B3GALT6Q96L58 329 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 SCLT1Q96NL6 688 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 RPS6KC1Q96S38 1066 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 MAP7D2Q96T17 732 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 LPIN3Q9BQK8 851 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 HERC2P3Q9BVR0 1158 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 FAM126AQ9BYI3 521 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 PSTPIP2Q9H939 334 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 PCDH12Q9NPG4 1184 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 HEBP1Q9NRV9 189 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 MARCH5Q9NX47 278 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 DACT1Q9NYF0 836 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 NDRG2Q9UN36 371 aaKnown RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 PRG3Q9Y2Y8 225 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-204ENST00000549064 DMXL2Q8TDJ6 3036 aa7.31□□□□□ -1.24
LIMA1-204ENST00000549064 SPAG17Q6Q759 2223 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 A0A1W2PQH9 124 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 hCG_1642624A0A1W2PR95 340 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 SRRM3A6NNA2 597 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 CCER2I3L3R5 266 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 NRP1O14786 923 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 IFIT3O14879 490 aaKnown RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 NCAM2O15394 837 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 TGM5O43548 720 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 GAS2O43903 313 aaKnown RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 MARCH6O60337 910 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms