RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 AMHR2Q16671 573 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 SMTNL2Q2TAL5 461 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 SGO2Q562F6 1265 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 OR6J1Q8NGC5 347 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 MAML3Q96JK9 1138 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 KATNBL1Q9H079 304 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 PDZD7Q9H5P4 517 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 C10orf88Q9H8K7 445 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 ATP8B3O60423 1300 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 PPEF2O14830 753 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 ZEB2O60315 1214 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 MTA2O94776 668 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 TNNC2P02585 160 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 PROZP22891 400 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 POLR2BP30876 1174 aaKnown RBP11.78□□□□□ -0.52
CUX1-212ENST00000547394 BEX3Q00994 111 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 PTP4A2Q12974 167 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 LAMC2Q13753 1193 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 MARCH8Q5T0T0 291 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 B4GALNT4Q76KP1 1039 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 TMC3Q7Z5M5 1100 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 WHAMMQ8TF30 809 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 CCDC114Q96M63 670 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 FMO2Q99518 471 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 FLRT1Q9NZU1 646 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 KCNG1Q9UIX4 513 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 CCDC66A2RUB6 948 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 KIAA0391O15091 583 aaKnown RBP11.78□□□□□ -0.52
CUX1-212ENST00000547394 ATF7P17544 494 aaPredicted RBP11.78□□□□□ -0.52
CUX1-212ENST00000547394 GTF2A2P52657 109 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 LACTBP83111 547 aaPredicted RBP11.78□□□□□ -0.52
CUX1-212ENST00000547394 GUCY1A3Q02108 690 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 ZNF252P-AS1Q0IIN9 211 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 SF3A3Q12874 501 aaKnown RBP eCLIP11.78□□□□□ -0.52
CUX1-212ENST00000547394 CUL1Q13616 776 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 HIC1Q14526 733 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 PPP1R7Q15435 360 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 GRIK4Q16099 956 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 ZSCAN26Q16670 478 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 SLC10A6Q3KNW5 377 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 KCNT1Q5JUK3 1230 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 DUPD1Q68J44 220 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 CHADLQ6NUI6 762 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 MTHFD1LQ6UB35 978 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 ZDHHC24Q6UX98 284 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 UBA3Q8TBC4 463 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 ANKRD36BP1Q96IX9 119 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 OSMRQ99650 979 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 SH3GL2Q99962 352 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 C2orf40Q9H1Z8 148 aa11.78□□□□□ -0.52
CUX1-212ENST00000547394 SAE1Q9UBE0 346 aaPredicted RBP11.78□□□□□ -0.52
CUX1-212ENST00000547394 TTC7AQ9ULT0 858 aaPredicted RBP11.78□□□□□ -0.52
CUX1-212ENST00000547394 TLDC2A0PJX2 215 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 TBXAS1P24557 533 aaPredicted RBP11.77□□□□□ -0.52
CUX1-212ENST00000547394 COILP38432 576 aaPredicted RBP11.77□□□□□ -0.52
CUX1-212ENST00000547394 HSPA9P38646 679 aaKnown RBP11.77□□□□□ -0.52
CUX1-212ENST00000547394 PHKA2P46019 1235 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 SLCO1A2P46721 670 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 BPIFB4P59827 614 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 MTM1Q13496 603 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 ACVR2BQ13705 512 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 SGSM1Q2NKQ1 1148 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 RAB6CQ53S08 254 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 DCUN1D2Q6PH85 259 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 PNMA8AQ86V59 439 aaPredicted RBP11.77□□□□□ -0.52
CUX1-212ENST00000547394 C12orf29Q8N999 325 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 PPTC7Q8NI37 304 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 MORC4Q8TE76 937 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 DDX27Q96GQ7 796 aaKnown RBP11.77□□□□□ -0.52
CUX1-212ENST00000547394 TINF2Q9BSI4 451 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 RAB6CQ9H0N0 254 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 GRHL1Q9NZI5 618 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 AGAP1Q9UPQ3 857 aa11.77□□□□□ -0.52
CUX1-212ENST00000547394 FOXO6A8MYZ6 492 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 GRAP2O75791 330 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 MYCNP04198 464 aaPredicted RBP11.77□□□□□ -0.53
CUX1-212ENST00000547394 MMP3P08254 477 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 CYP2B6P20813 491 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 CTNNA2P26232 953 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 ZNF132P52740 706 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 DYNLT1P63172 113 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 ZNF844Q08AG5 666 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 LIN9Q5TKA1 542 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 MSL3Q8N5Y2 521 aaKnown RBP11.77□□□□□ -0.53
CUX1-212ENST00000547394 NAP1L3Q99457 506 aaPredicted RBP11.77□□□□□ -0.53
CUX1-212ENST00000547394 NMRK2Q9NPI5 230 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 ZDHHC18Q9NUE0 388 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 PROSCO94903 275 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 ERLIN2O94905 339 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 HUNKP57058 714 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 PTPN20Q4JDL3 420 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 SPRYD7Q5W111 196 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 CST9Q5W186 159 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 ALS2CLQ60I27 953 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 LRRC31Q6UY01 552 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 UBR7Q8N806 425 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 JOSD2Q8TAC2 188 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 EIF2AQ9BY44 585 aaKnown RBP11.77□□□□□ -0.53
CUX1-212ENST00000547394 SEMA4AQ9H3S1 761 aa11.77□□□□□ -0.53
CUX1-212ENST00000547394 KLK14Q9P0G3 267 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms