RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 NFRKBQ6P4R8 1299 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 FIGNL1Q6PIW4 674 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 C15orf39Q6ZRI6 1047 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 CCDC186Q7Z3E2 898 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 TMC6Q7Z403 805 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 SRGAP1Q7Z6B7 1085 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 ZSCAN30Q86W11 494 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 CNGA4Q8IV77 575 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 KSR1Q8IVT5 923 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 KIAA0319LQ8IZA0 1049 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 C3orf58Q8NDZ4 430 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 OR13H1Q8NG92 308 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 DEPTORQ8TB45 409 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 CACTINQ8WUQ7 758 aaKnown RBP9.14□□□□□ -0.95
VPS29-203ENST00000546588 ZNF296Q8WUU4 475 aaPredicted RBP9.14□□□□□ -0.95
VPS29-203ENST00000546588 LENG1Q96BZ8 264 aaPredicted RBP9.14□□□□□ -0.95
VPS29-203ENST00000546588 DNAJC7Q99615 494 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 CBWD1Q9BRT8 395 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 MTG1Q9BT17 334 aaPredicted RBP9.14□□□□□ -0.95
VPS29-203ENST00000546588 KIFC3Q9BVG8 833 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 NAA15Q9BXJ9 866 aaKnown RBP9.14□□□□□ -0.95
VPS29-203ENST00000546588 POLD4Q9HCU8 107 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 PRMT7Q9NVM4 692 aaPredicted RBP9.14□□□□□ -0.95
VPS29-203ENST00000546588 DDX20Q9UHI6 824 aaKnown RBP9.14□□□□□ -0.95
VPS29-203ENST00000546588 GTF2IRD1Q9UHL9 959 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 FEZ2Q9UHY8 353 aaPredicted RBP9.14□□□□□ -0.95
VPS29-203ENST00000546588 CAPN11Q9UMQ6 739 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 TNFSF13BQ9Y275 285 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 COQ4Q9Y3A0 265 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS29-203ENST00000546588 LTBP2Q14767 1821 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 TDRD15B5MCY1 1934 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 TMEM238LA0A1B0GVL6 79 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 MYADML2A6NDP7 307 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 CCDC169A6NNP5 214 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 ANKRD63C9JTQ0 380 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 K7ERI5 159 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 HNRNPDLO14979 420 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 ZEB2O60315 1214 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 STX10O60499 249 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 GPR32O75388 356 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 TOM1L1O75674 476 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 CABYRO75952 493 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 LDHAP00338 332 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 AFPP02771 609 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 ADRB2P07550 413 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 ACPPP15309 386 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 GTF2H1P32780 548 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 MTIF2P46199 727 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 CASP4P49662 377 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 UBXN1Q04323 297 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 MCL1Q07820 350 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 RBL2Q08999 1139 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 STRN3Q13033 797 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 PWP1Q13610 501 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 SNRNP35Q16560 246 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 MAPK6Q16659 721 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 C1orf220Q5T0J3 134 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 FKBP15Q5T1M5 1219 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 CEP135Q66GS9 1140 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 TAF2Q6P1X5 1199 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 MAEAQ7L5Y9 396 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 RAB44Q7Z6P3 723 aaPredicted RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 NOP9Q86U38 636 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 ZBTB8OSQ8IWT0 167 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 FAM186BQ8IYM0 893 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 GPD1LQ8N335 351 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 PCSK9Q8NBP7 692 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 RNF149Q8NC42 400 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 TRAPPC12Q8WVT3 735 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 PSMG3-AS1Q96PY0 264 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 TSPAN18Q96SJ8 248 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 OSMRQ99650 979 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 ACO2Q99798 780 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 MRPL4Q9BYD3 311 aaKnown RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 HAPLN2Q9GZV7 340 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 VPS16Q9H269 839 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 IKZF4Q9H2S9 585 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 ADAMTS10Q9H324 1103 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 PAK6Q9NQU5 681 aaPredicted RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 ZFATQ9P243 1243 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 SUCLA2Q9P2R7 463 aaPredicted RBP9.13□□□□□ -0.95
VPS29-203ENST00000546588 MYO6Q9UM54 1294 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 FRMD4BQ9Y2L6 1034 aa9.13□□□□□ -0.95
VPS29-203ENST00000546588 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.13□□□□□ -0.95
VPS29-203ENST00000546588 ATP8B3O60423 1300 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 LRRIQ4A6NIV6 560 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 TISP43B9A030 160 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 EXTL3O43909 919 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 ZNF500O60304 480 aaPredicted RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 N4BP1O75113 896 aaKnown RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 CAND2O75155 1236 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 NOL4O94818 638 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 ZRANB2O95218 330 aaKnown RBP eCLIP9.12□□□□□ -0.951e-7■■■■□ 19.3
VPS29-203ENST00000546588 FAM157BP0CG42 384 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 GNAT1P11488 350 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 CCND3P30281 292 aaPredicted RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 FMO5P49326 533 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 CLCN3P51790 818 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms