RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 GOLGA8SH3BPF8 625 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 GOLGA8MH3BSY2 632 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 TCEA3O75764 348 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 POLGP54098 1239 aaPredicted RBP16.74■□□□□ 0.27
LDLR-204ENST00000545707 SP2Q02086 613 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.74■□□□□ 0.272e-6■■□□□ 12
LDLR-204ENST00000545707 C4orf33Q8N1A6 199 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 TAB3Q8N5C8 712 aaPredicted RBP16.74■□□□□ 0.27
LDLR-204ENST00000545707 FEZF2Q8TBJ5 459 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 AGAP11Q8TF27 550 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 MAML1Q92585 1016 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 SLC9A2Q9UBY0 812 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 LGALS13Q9UHV8 139 aa16.74■□□□□ 0.27
LDLR-204ENST00000545707 TTLL13PA6NNM8 815 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 CST3P01034 146 aaPredicted RBP16.73■□□□□ 0.27
LDLR-204ENST00000545707 PECAM1P16284 738 aaPredicted RBP16.73■□□□□ 0.27
LDLR-204ENST00000545707 ATP4AP20648 1035 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 ARSEP51690 589 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 NOP14P78316 857 aaKnown RBP16.73■□□□□ 0.27
LDLR-204ENST00000545707 CLDN10P78369 228 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 STRN3Q13033 797 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 GPS1Q13098 491 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 DNAJC3Q13217 504 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 EMC2Q15006 297 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 FAM182AQ5T1J6 154 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 PRAMEF18Q5VWM3 479 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 ARHGEF18Q6ZSZ5 1173 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 ECHDC2Q86YB7 292 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 EXD1Q8NHP7 514 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 MAGEC3Q8TD91 643 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 GPRASP2Q96D09 838 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 MAGEB18Q96M61 343 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 CCDC77Q9BR77 488 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 MRPL47Q9HD33 250 aaKnown RBP16.73■□□□□ 0.27
LDLR-204ENST00000545707 SLCO1B3Q9NPD5 702 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 EURLQ9NYK6 297 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 MAP3K20Q9NYL2 800 aaKnown RBP16.73■□□□□ 0.27
LDLR-204ENST00000545707 ZNRF3Q9ULT6 936 aa16.73■□□□□ 0.27
LDLR-204ENST00000545707 LIASO43766 372 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 SLC8A1P32418 973 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 OGDHQ02218 1023 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 ZNF252P-AS1Q0IIN9 211 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 STAT4Q14765 748 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 PKN2Q16513 984 aaKnown RBP16.72■□□□□ 0.27
LDLR-204ENST00000545707 ABHD15Q6UXT9 468 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 ZCCHC9Q8N567 271 aaKnown RBP16.72■□□□□ 0.27
LDLR-204ENST00000545707 ZNF606Q8WXB4 792 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 ZBED3Q96IU2 234 aaPredicted RBP16.72■□□□□ 0.27
LDLR-204ENST00000545707 MCEEQ96PE7 176 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 MSTO1Q9BUK6 570 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 PITPNM3Q9BZ71 974 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 SAE1Q9UBE0 346 aaPredicted RBP16.72■□□□□ 0.27
LDLR-204ENST00000545707 CFAP73A6NFT4 308 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 K7ERI5 159 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 IFNB1P01574 187 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 KRT1P04264 644 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 HMGB2P26583 209 aaKnown RBP16.72■□□□□ 0.27
LDLR-204ENST00000545707 FSTL1Q12841 308 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 RTKN2Q8IZC4 609 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 RDM1Q8NG50 284 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 SENP7Q9BQF6 1050 aa16.72■□□□□ 0.27
LDLR-204ENST00000545707 GLRA2P23416 452 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 PLCB3Q01970 1234 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 GAD2Q05329 585 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 MYO1EQ12965 1108 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 ZNF268Q14587 947 aaPredicted RBP16.71■□□□□ 0.27
LDLR-204ENST00000545707 AEBP2Q6ZN18 517 aaPredicted RBP16.71■□□□□ 0.27
LDLR-204ENST00000545707 PHF13Q86YI8 300 aaPredicted RBP16.71■□□□□ 0.27
LDLR-204ENST00000545707 ANKMY2Q8IV38 441 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 NIM1KQ8IY84 436 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 MTMR14Q8NCE2 650 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 SLITRK1Q96PX8 696 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 TMEM121Q9BTD3 319 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 VPS37BQ9H9H4 285 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 RXFP1Q9HBX9 757 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 KIAA1586Q9HCI6 787 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 PARVAQ9NVD7 372 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 KLHL14Q9P2G3 628 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 GRID1Q9ULK0 1009 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 FAM47DPA6NHR8 397 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 PEX10O60683 326 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 BRD2P25440 801 aaKnown RBP16.71■□□□□ 0.27
LDLR-204ENST00000545707 ELF1P32519 619 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 TNFSF9P41273 254 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 MTFR1Q15390 333 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 AGBL3Q8NEM8 1001 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 NSUN6Q8TEA1 469 aaKnown RBP16.71■□□□□ 0.27
LDLR-204ENST00000545707 DOCK5Q9H7D0 1870 aa16.71■□□□□ 0.27
LDLR-204ENST00000545707 A0A1W2PPM1 405 aa16.7■□□□□ 0.26
LDLR-204ENST00000545707 DNALI1O14645 258 aaPredicted RBP16.7■□□□□ 0.26
LDLR-204ENST00000545707 ECM2O94769 699 aaPredicted RBP16.7■□□□□ 0.26
LDLR-204ENST00000545707 POTEJP0CG39 1038 aa16.7■□□□□ 0.26
LDLR-204ENST00000545707 KRT15P19012 456 aa16.7■□□□□ 0.26
LDLR-204ENST00000545707 DYNLT1P63172 113 aa16.7■□□□□ 0.26
LDLR-204ENST00000545707 NCOA4Q13772 614 aa16.7■□□□□ 0.26
LDLR-204ENST00000545707 NBPF12Q5TAG4 269 aaPredicted RBP16.7■□□□□ 0.26
LDLR-204ENST00000545707 CYP4A22Q5TCH4 519 aa16.7■□□□□ 0.26
LDLR-204ENST00000545707 TRABD2AQ86V40 505 aa16.7■□□□□ 0.26
LDLR-204ENST00000545707 ZBED8Q8IZ13 594 aa16.7■□□□□ 0.26
LDLR-204ENST00000545707 ANKRD35Q8N283 1001 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms