RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 RAP1GAPP47736 663 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 STRN3Q13033 797 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 KLF1Q13351 362 aaPredicted RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 ZACNQ401N2 412 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 ECHDC2Q86YB7 292 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 RHOT1Q8IXI2 618 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 C12orf50Q8NA57 414 aaPredicted RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 ANKLE1Q8NAG6 615 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 ZNF606Q8WXB4 792 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 FBXL18Q96ME1 805 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 MTMR12Q9C0I1 747 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 SLC9A2Q9UBY0 812 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 EMC2Q15006 297 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 CLUL1Q15846 466 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 ZNF568Q3ZCX4 644 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 MFSD5Q6N075 450 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 DEPTORQ8TB45 409 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 TMC2Q8TDI7 906 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 CKAP2Q8WWK9 683 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 ANKEF1Q9NU02 776 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 GBP2P32456 591 aaPredicted RBP15.92■□□□□ 0.14
USP28-214ENST00000545540 GDF10P55107 478 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 GCNT1Q02742 428 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 SMAD1Q15797 465 aaKnown RBP15.92■□□□□ 0.14
USP28-214ENST00000545540 SPDYCQ5MJ68 293 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 TRIM50Q86XT4 487 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 R3HDMLQ9H3Y0 253 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 ATP6V0A4Q9HBG4 840 aa15.92■□□□□ 0.14
USP28-214ENST00000545540 LYPLA2O95372 231 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 NQO1P15559 274 aaKnown RBP15.91■□□□□ 0.14
USP28-214ENST00000545540 TAC1P20366 129 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 GLRA2P23416 452 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 MYL6P60660 151 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 ZNF252P-AS1Q0IIN9 211 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 PDIA2Q13087 525 aaKnown RBP15.91■□□□□ 0.14
USP28-214ENST00000545540 ITIH4Q14624 930 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 TAF5Q15542 800 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 PREPLQ4J6C6 727 aaPredicted RBP15.91■□□□□ 0.14
USP28-214ENST00000545540 ABRAQ8N0Z2 381 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 LRRC71Q8N4P6 559 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 CCDC33Q8N5R6 958 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 CEP120Q8N960 986 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.91■□□□□ 0.14
USP28-214ENST00000545540 MORC4Q8TE76 937 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 ST6GALNAC4Q9H4F1 302 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 ETNK1Q9HBU6 452 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 PGAP2Q9UHJ9 254 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 HAO1Q9UJM8 370 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 DCTN4Q9UJW0 460 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 CD48P09326 243 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 FGFR1P11362 822 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 EZRP15311 586 aaKnown RBP15.91■□□□□ 0.14
USP28-214ENST00000545540 CCND2P30279 289 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 TFAMQ00059 246 aaKnown RBP15.91■□□□□ 0.14
USP28-214ENST00000545540 NCOA4Q13772 614 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 LIN9Q5TKA1 542 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 THNSL1Q8IYQ7 743 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 NSMCE1Q8WV22 266 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 ATP6V0A1Q93050 837 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 ROPN1BQ9BZX4 212 aaPredicted RBP15.91■□□□□ 0.14
USP28-214ENST00000545540 ROPN1Q9HAT0 212 aaPredicted RBP15.91■□□□□ 0.14
USP28-214ENST00000545540 EXTL3O43909 919 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 DIAPH2O60879 1101 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 ANP32DO95626 131 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 CD19P15391 556 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 CA4P22748 312 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 CDH8P55286 799 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 CENPCQ03188 943 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 NAA25Q14CX7 972 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 TMEM132BQ14DG7 1078 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 SLC1A5Q15758 541 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 ANKRD22Q5VYY1 191 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 ERICH1Q86X53 443 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 ERP27Q96DN0 273 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 TEPSINQ96N21 525 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 KIAA1586Q9HCI6 787 aa15.91■□□□□ 0.14
USP28-214ENST00000545540 DGAT1O75907 488 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 CYP1A1P04798 512 aaPredicted RBP15.9■□□□□ 0.14
USP28-214ENST00000545540 GCAP28676 217 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 SFNP31947 248 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 RAB6CQ53S08 254 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 CCDC89Q8N998 374 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 WRNIP1Q96S55 665 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 TMEM109Q9BVC6 243 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 RAB6CQ9H0N0 254 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 DEFB129Q9H1M3 183 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 A1CFQ9NQ94 594 aaKnown RBP15.9■□□□□ 0.14
USP28-214ENST00000545540 ZNRF3Q9ULT6 936 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 H0Y3Z8 333 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 CBX6O95503 412 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 PSAPP07602 524 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 KRT19P08727 400 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 GBP1P32455 592 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 GCLCP48506 637 aaPredicted RBP15.9■□□□□ 0.14
USP28-214ENST00000545540 COPS2P61201 443 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 TCEAL1Q15170 157 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 FEZF2Q8TBJ5 459 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 TFAP2BQ92481 460 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 TCRBV7S3A2A0A539 114 aa15.9■□□□□ 0.14
USP28-214ENST00000545540 C2orf71A6NGG8 1288 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms