RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 KLHL30Q0D2K2 578 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 SNX30Q5VWJ9 437 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 KRT79Q5XKE5 535 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 PPP4R3AQ6IN85 833 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 ATP8B4Q8TF62 1192 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 RAD54LQ92698 747 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 FAM136AQ96C01 138 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 SNF8Q96H20 258 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 CNOT6LQ96LI5 555 aaKnown RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 CIB1Q99828 191 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 NUP85Q9BW27 656 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 CALN1Q9BXU9 219 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 ABHD10Q9NUJ1 306 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 GGA3Q9NZ52 723 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 GPRC5DQ9NZD1 345 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 ADAM22Q9P0K1 906 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 AGAP1Q9UPQ3 857 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 KIAA1024Q9UPX6 916 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 SRRM3A6NNA2 597 aaPredicted RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 FAM86B1E9PN63 330 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 ENO2P09104 434 aaPredicted RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 FAM86B2P0C5J1 330 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 AP2B1P63010 937 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 DHX9Q08211 1270 aaKnown RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 NDUFA5Q16718 116 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 CDONQ4KMG0 1287 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 PPP1R18Q6NYC8 613 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 TUBA3EQ6PEY2 450 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 IFNL1Q8IU54 200 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 ANKMY2Q8IV38 441 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 GMCL1P1Q8NEA9 526 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 SERHL2Q9H4I8 314 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 AGPAT5Q9NUQ2 364 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 FBXO28Q9NVF7 368 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 SLC12A4Q9UP95 1085 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 ADGRG1Q9Y653 693 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 PHF20L1A8MW92 1017 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 A8MX80 341 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 MED24O75448 989 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 GSTA1P08263 222 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 NQO1P15559 274 aaKnown RBP11.72□□□□□ -0.53
CDH3-203ENST00000542274 CCNE1P24864 410 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 PSMC6P62333 389 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 KCNJ2P63252 427 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 TNFAIP1Q13829 316 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 HSP90AA5PQ58FG0 334 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 IL23RQ5VWK5 629 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 CCDC62Q6P9F0 684 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 POTEGQ6S5H5 508 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 AADATQ8N5Z0 425 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 MB21D1Q8N884 522 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 EPS8L3Q8TE67 593 aaKnown RBP11.72□□□□□ -0.53
CDH3-203ENST00000542274 FBF1Q8TES7 1133 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 DNAJC1Q96KC8 554 aaKnown RBP11.72□□□□□ -0.53
CDH3-203ENST00000542274 PANX2Q96RD6 677 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 TUBGCP2Q9BSJ2 902 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.72□□□□□ -0.53
CDH3-203ENST00000542274 CRNNQ9UBG3 495 aaPredicted RBP11.72□□□□□ -0.53
CDH3-203ENST00000542274 TRIM10Q9UDY6 481 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 PCDHGA8Q9Y5G5 932 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 SNX9Q9Y5X1 595 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 STRNO43815 780 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 GNAZP19086 355 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 ACADVLP49748 655 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 HSD17B4P51659 736 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 ARHGAP4P98171 946 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 SPIDRQ14159 915 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 PSMD6Q15008 389 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 TMEM119Q4V9L6 283 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 PRR23CQ6ZRP0 262 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 GALNT7Q86SF2 657 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 SPATA24Q86W54 205 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 FBXO11Q86XK2 927 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 FNDC8Q8TC99 324 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 ZNF507Q8TCN5 953 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 HSPBAP1Q96EW2 488 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 RBM14Q96PK6 669 aaKnown RBP11.72□□□□□ -0.53
CDH3-203ENST00000542274 AMNQ9BXJ7 453 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 ZNF341Q9BYN7 854 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 CUEDC2Q9H467 287 aa11.72□□□□□ -0.53
CDH3-203ENST00000542274 LGALS16A8MUM7 142 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 GOLGA8MH3BSY2 632 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 S100BP04271 92 aaPredicted RBP11.71□□□□□ -0.53
CDH3-203ENST00000542274 NR2C2P49116 596 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 BPIFB3P59826 476 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 NNTQ13423 1086 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 TUBB2AQ13885 445 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 TAF1CQ15572 869 aaPredicted RBP11.71□□□□□ -0.53
CDH3-203ENST00000542274 TMEM259Q4ZIN3 620 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 GPC2Q8N158 579 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 BCL7CQ8WUZ0 217 aaPredicted RBP11.71□□□□□ -0.53
CDH3-203ENST00000542274 GMCL1Q96IK5 515 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 TUBB2BQ9BVA1 445 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 VTA1Q9NP79 307 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 USP20Q9Y2K6 914 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 TMX2Q9Y320 296 aa11.71□□□□□ -0.53
CDH3-203ENST00000542274 GMNCA6NCL1 334 aa11.71□□□□□ -0.54
CDH3-203ENST00000542274 RNGTTO60942 597 aaKnown RBP11.71□□□□□ -0.54
CDH3-203ENST00000542274 CTRB1P17538 263 aa11.71□□□□□ -0.54
CDH3-203ENST00000542274 USP14P54578 494 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms