RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 CMTR2Q8IYT2 770 aaKnown RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 LRRC43Q8N309 656 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 SPC24Q8NBT2 197 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 NEK11Q8NG66 645 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 PHOSPHO2Q8TCD6 241 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 KREMEN1Q96MU8 473 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 NT5C1BQ96P26 610 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 YME1L1Q96TA2 773 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 ARID3AQ99856 593 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 NAA15Q9BXJ9 866 aaKnown RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 MRPL9Q9BYD2 267 aaKnown RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 MTIF3Q9H2K0 278 aaKnown RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 UBE2TQ9NPD8 197 aaPredicted RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 NLRC4Q9NPP4 1024 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 PLCB1Q9NQ66 1216 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 NXF1Q9UBU9 619 aaKnown RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 RABGEF1Q9UJ41 708 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 DNAJC12Q9UKB3 198 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 PRG3Q9Y2Y8 225 aaPredicted RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 FHOD1Q9Y613 1164 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 ITIH6Q6UXX5 1313 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 RANBP2P49792 3224 aaKnown RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 TLL1O43897 1013 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 ARHGEF15O94989 841 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 KIF4AO95239 1232 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 STAU1O95793 577 aaKnown RBP10.02□□□□□ -0.81
DDX55-208ENST00000541259 ALDH2P05091 517 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 UCHL3P15374 230 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 ATICP31939 592 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 CLCN1P35523 988 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 ASPAP45381 313 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 BRCC3P46736 316 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 RAP1GAPP47736 663 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 TAF6P49848 677 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 CDH8P55286 799 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 BCAR1P56945 870 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 TBX2Q13207 712 aaPredicted RBP10.02□□□□□ -0.81
DDX55-208ENST00000541259 ARHGAP44Q17R89 818 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 WDR72Q3MJ13 1102 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 TIGD5Q53EQ6 642 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 ZNF667Q5HYK9 610 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 SPOUT1Q5T280 376 aaKnown RBP10.02□□□□□ -0.81
DDX55-208ENST00000541259 DCLRE1AQ6PJP8 1040 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 TMEM173Q86WV6 379 aaPredicted RBP10.02□□□□□ -0.81
DDX55-208ENST00000541259 DRC7Q8IY82 874 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 PPM1KQ8N3J5 372 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 LRRC52Q8N7C0 313 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 BCL7CQ8WUZ0 217 aaPredicted RBP10.02□□□□□ -0.81
DDX55-208ENST00000541259 TAF4BQ92750 862 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 UROC1Q96N76 676 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 RAD9AQ99638 391 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 TTYH3Q9C0H2 523 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 SDCBP2Q9H190 292 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 VRTNQ9H8Y1 702 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 MARCH5Q9NX47 278 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 APEX2Q9UBZ4 518 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 FAN1Q9Y2M0 1017 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 R3HCC1Q9Y3T6 440 aaKnown RBP10.02□□□□□ -0.81
DDX55-208ENST00000541259 INSL6Q9Y581 213 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 SNX9Q9Y5X1 595 aa10.02□□□□□ -0.81
DDX55-208ENST00000541259 MYO7AQ13402 2215 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 KPNA7A9QM74 516 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 B3GAT3O94766 335 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 GYPCP04921 128 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 WEE2P0C1S8 567 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 LINC00271P0C7V0 271 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 PNMA6AP0CW24 399 aaPredicted RBP10.01□□□□□ -0.81
DDX55-208ENST00000541259 TRIM21P19474 475 aaKnown RBP10.01□□□□□ -0.81
DDX55-208ENST00000541259 CASP14P31944 242 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 FXR1P51114 621 aaKnown RBP eCLIP10.01□□□□□ -0.81
DDX55-208ENST00000541259 LSM11P83369 360 aaKnown RBP eCLIP10.01□□□□□ -0.81
DDX55-208ENST00000541259 MYO1EQ12965 1108 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 CUL2Q13617 745 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 SV2CQ496J9 727 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 KCNT2Q6UVM3 1135 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 SPRED2Q7Z698 418 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.01□□□□□ -0.81
DDX55-208ENST00000541259 FIBCD1Q8N539 461 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 COLGALT1Q8NBJ5 622 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 CCDC150Q8NCX0 1101 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 BAP1Q92560 729 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 SENP8Q96LD8 212 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 ZNF560Q96MR9 790 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 TMEM175Q9BSA9 504 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 COLEC11Q9BWP8 271 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 IMPG2Q9BZV3 1241 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 GPR88Q9GZN0 384 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 NIF3L1Q9GZT8 377 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 SMYD3Q9H7B4 428 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 VPS9D1Q9Y2B5 631 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.01□□□□□ -0.811e-6■■□□□ 14.3
DDX55-208ENST00000541259 TIMM13Q9Y5L4 95 aaPredicted RBP10.01□□□□□ -0.81
DDX55-208ENST00000541259 ATG2AQ2TAZ0 1938 aa10.01□□□□□ -0.81
DDX55-208ENST00000541259 TMEM189-UBE2V1I3L0A0 370 aa10□□□□□ -0.81
DDX55-208ENST00000541259 TK2O00142 265 aa10□□□□□ -0.81
DDX55-208ENST00000541259 SMAPO00193 183 aa10□□□□□ -0.81
DDX55-208ENST00000541259 FOXN3O00409 490 aaPredicted RBP10□□□□□ -0.81
DDX55-208ENST00000541259 CYB561D2O14569 222 aa10□□□□□ -0.81
DDX55-208ENST00000541259 HCRTO43612 131 aa10□□□□□ -0.81
DDX55-208ENST00000541259 TADA2AO75478 443 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms