RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 RNF216Q9NWF9 866 aaPredicted RBP18.95■□□□□ 0.62
CLIP1-215ENST00000541108 A0A0U1RQJ8 604 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 RCCD1A6NED2 376 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 PPEF2O14830 753 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 CILPO75339 1184 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 PAEPP09466 180 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 FAM163BP0C2L3 166 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 PAX3P23760 479 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 GNA15P30679 374 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 RFC2P35250 354 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 SCNN1GP51170 649 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 AFF1P51825 1210 aaKnown RBP18.94■□□□□ 0.62
CLIP1-215ENST00000541108 LILRA4P59901 499 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 FMO1Q01740 532 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 LRRC26Q2I0M4 334 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 SCARA5Q6ZMJ2 495 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 DPH6Q7L8W6 267 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 ATRIPQ8WXE1 791 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 MMS19Q96T76 1030 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 PPP1R12CQ9BZL4 782 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 MCOLN1Q9GZU1 580 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 KANSL3Q9P2N6 904 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 BARX2Q9UMQ3 279 aaPredicted RBP18.94■□□□□ 0.62
CLIP1-215ENST00000541108 SNX9Q9Y5X1 595 aa18.94■□□□□ 0.62
CLIP1-215ENST00000541108 KIF5CO60282 957 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 MMEP08473 750 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 CDH8P55286 799 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 CCL23P55773 120 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 DNTTIP2Q5QJE6 756 aaKnown RBP18.93■□□□□ 0.62
CLIP1-215ENST00000541108 GLB1LQ6UWU2 654 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 DDX27Q96GQ7 796 aaKnown RBP18.93■□□□□ 0.62
CLIP1-215ENST00000541108 SCLYQ96I15 445 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 SDCBP2Q9H190 292 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 ISCUQ9H1K1 167 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 SMYD3Q9H7B4 428 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 GOLGA2P5Q9HBQ8 144 aa18.93■□□□□ 0.62
CLIP1-215ENST00000541108 BTNL10A8MVZ5 291 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 ABL1P00519 1130 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 H2AFZP0C0S5 128 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 CYP2C18P33260 490 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 TAF3Q5VWG9 929 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 TRIM72Q6ZMU5 477 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 H2AFVQ71UI9 128 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 RNF10Q8N5U6 811 aaKnown RBP18.92■□□□□ 0.62
CLIP1-215ENST00000541108 ZNF606Q8WXB4 792 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 RSPH1Q8WYR4 309 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 UROC1Q96N76 676 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 SEPT11Q9NVA2 429 aaKnown RBP18.92■□□□□ 0.62
CLIP1-215ENST00000541108 GUCA1BQ9UMX6 200 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 RTN2O75298 545 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 TACC1O75410 805 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 TUSC3Q13454 348 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 UPP1Q16831 310 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 PPP1R2P3Q6NXS1 205 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 LIMS2Q7Z4I7 341 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 WHAMMQ8TF30 809 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 PCDHB18PQ96TA0 734 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 KIAA1257Q9ULG3 409 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 PCDHB7Q9Y5E2 793 aa18.92■□□□□ 0.62
CLIP1-215ENST00000541108 TET1Q8NFU7 2136 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 TDRD15B5MCY1 1934 aaKnown RBP18.91■□□□□ 0.62
CLIP1-215ENST00000541108 ANKRD62A6NC57 917 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 POMCP01189 267 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 RAP1GAPP47736 663 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 RAD23BP54727 409 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 SOWAHAQ2M3V2 549 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 ZNF394Q53GI3 561 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 UNC93AQ86WB7 457 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 PALB2Q86YC2 1186 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 TOP6BLQ8N6T0 577 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 TMEM176AQ96HP8 235 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 TFR2Q9UP52 801 aa18.91■□□□□ 0.62
CLIP1-215ENST00000541108 PODXLO00592 558 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 KIAA0355O15063 1070 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 SPTLC1O15269 473 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 HOXA2O43364 376 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 THAP12O43422 761 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 TIMP1P01033 207 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 CYP1A1P04798 512 aaPredicted RBP18.9■□□□□ 0.62
CLIP1-215ENST00000541108 UNGP13051 313 aaPredicted RBP18.9■□□□□ 0.62
CLIP1-215ENST00000541108 CLCNKBP51801 687 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 GALCP54803 685 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 GNG11P61952 73 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 CRIPAKQ8N1N5 446 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 APPL2Q8NEU8 664 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 URGCPQ8TCY9 931 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 NT5C1AQ9BXI3 368 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 PDCL3Q9H2J4 239 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 PCDHGC3Q9UN70 934 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 DUSP10Q9Y6W6 482 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 SCN5AQ14524 2016 aa18.9■□□□□ 0.62
CLIP1-215ENST00000541108 A0A0A6YYK5 440 aaPredicted RBP18.89■□□□□ 0.61
CLIP1-215ENST00000541108 MED7O43513 233 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 HUS1O60921 280 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 FTLP02792 175 aaPredicted RBP18.89■□□□□ 0.61
CLIP1-215ENST00000541108 TMEM253P0C7T8 217 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 TTC3P53804 2025 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 CLEC16AQ2KHT3 1053 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 NOMO2Q5JPE7 1267 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 CLLU1OSQ5K130 101 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms