RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 EOMESO95936 686 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 PFKMP08237 780 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 SKIP12755 728 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 ITGA4P13612 1032 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 TNFAIP3P21580 790 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 MLH1P40692 756 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 EPHB4P54760 987 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 TUBB4BP68371 445 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 CKAP4Q07065 602 aaKnown RBP13.35□□□□□ -0.27
SMAD3-204ENST00000540846 WDR44Q5JSH3 913 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 CLLU1OSQ5K130 101 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 NOP9Q86U38 636 aaKnown RBP13.35□□□□□ -0.27
SMAD3-204ENST00000540846 PALB2Q86YC2 1186 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 CD302Q8IX05 232 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 RABGGTAQ92696 567 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 BADQ92934 168 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 FAM212AQ96EL1 285 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 PPP1R10Q96QC0 940 aaKnown RBP13.35□□□□□ -0.27
SMAD3-204ENST00000540846 MTMR12Q9C0I1 747 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 ELAC1Q9H777 363 aaKnown RBP13.35□□□□□ -0.27
SMAD3-204ENST00000540846 IL23AQ9NPF7 189 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 TMEM161AQ9NX61 479 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 GIT1Q9Y2X7 761 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 DERAQ9Y315 318 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 HYOU1Q9Y4L1 999 aa13.35□□□□□ -0.27
SMAD3-204ENST00000540846 SMIM28A0A1B0GU29 152 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 CTAGE15A4D2H0 777 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 ARL5CA6NH57 179 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 TULP1O00294 542 aaPredicted RBP13.34□□□□□ -0.27
SMAD3-204ENST00000540846 CYP26A1O43174 497 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 CTAGE8P0CG41 777 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 CHRNB2P17787 502 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 TCP1P17987 556 aaKnown RBP13.34□□□□□ -0.27
SMAD3-204ENST00000540846 USP8P40818 1118 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 YARSP54577 528 aaKnown RBP13.34□□□□□ -0.27
SMAD3-204ENST00000540846 GALCP54803 685 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 NAP1L1P55209 391 aaKnown RBP13.34□□□□□ -0.27
SMAD3-204ENST00000540846 SOX4Q06945 474 aaPredicted RBP13.34□□□□□ -0.27
SMAD3-204ENST00000540846 GLRA4Q5JXX5 417 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.34□□□□□ -0.27
SMAD3-204ENST00000540846 CTAGE6Q86UF2 777 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 NT5DC4Q86YG4 428 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 CTAGE4Q8IX94 777 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 C1orf127Q8N9H9 656 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 LRRC57Q8N9N7 239 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 GAD1Q99259 594 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 TLR10Q9BXR5 811 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 RSAD1Q9HA92 442 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 APOBEC3GQ9HC16 384 aaKnown RBP13.34□□□□□ -0.27
SMAD3-204ENST00000540846 MIOSQ9NXC5 875 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 PARP2Q9UGN5 583 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 PUF60Q9UHX1 559 aaKnown RBP13.34□□□□□ -0.27
SMAD3-204ENST00000540846 SIX4Q9UIU6 781 aa13.34□□□□□ -0.27
SMAD3-204ENST00000540846 ABHD14A-ACY1A0A1B0GW23 586 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 SRGAP2O75044 1071 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 ACRP10323 421 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 CYP11B1P15538 503 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 SYN1P17600 705 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 TBXAS1P24557 533 aaPredicted RBP13.33□□□□□ -0.28
SMAD3-204ENST00000540846 PDE6CP51160 858 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 RBM10P98175 930 aaKnown RBP13.33□□□□□ -0.28
SMAD3-204ENST00000540846 CDR2Q01850 454 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 CUL2Q13617 745 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 NCOA4Q13772 614 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 TMEM132DQ14C87 1099 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 TEX35Q5T0J7 233 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 SMYD5Q6GMV2 418 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 ZNF572Q7Z3I7 529 aaPredicted RBP13.33□□□□□ -0.28
SMAD3-204ENST00000540846 MTERF4Q7Z6M4 381 aaKnown RBP13.33□□□□□ -0.28
SMAD3-204ENST00000540846 SLC47A2Q86VL8 602 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 HACE1Q8IYU2 909 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 RPUSD2Q8IZ73 545 aaKnown RBP13.33□□□□□ -0.28
SMAD3-204ENST00000540846 RFFLQ8WZ73 363 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 C18orf25Q96B23 403 aaPredicted RBP13.33□□□□□ -0.28
SMAD3-204ENST00000540846 PGBD4Q96DM1 585 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 RPGRIP1Q96KN7 1286 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 OSBPL9Q96SU4 736 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 ARID3AQ99856 593 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 ISCUQ9H1K1 167 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 TAS2R14Q9NYV8 317 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 TUBGCP4Q9UGJ1 667 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 LAMA2P24043 3122 aaKnown RBP13.33□□□□□ -0.28
SMAD3-204ENST00000540846 KIAA1671Q9BY89 1806 aa13.33□□□□□ -0.28
SMAD3-204ENST00000540846 ANKRD62A6NC57 917 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 B4GALT3O60512 393 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 ASS1P00966 412 aaKnown RBP13.32□□□□□ -0.28
SMAD3-204ENST00000540846 FGFR1P11362 822 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 GZMAP12544 262 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 H2AFXP16104 143 aaPredicted RBP13.32□□□□□ -0.28
SMAD3-204ENST00000540846 ACO1P21399 889 aaKnown RBP13.32□□□□□ -0.28
SMAD3-204ENST00000540846 GUCY2FP51841 1108 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 NOP14P78316 857 aaKnown RBP13.32□□□□□ -0.28
SMAD3-204ENST00000540846 TFAMQ00059 246 aaKnown RBP13.32□□□□□ -0.28
SMAD3-204ENST00000540846 FMO1Q01740 532 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 FPGSQ05932 587 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 PPIGQ13427 754 aaKnown RBP eCLIP13.32□□□□□ -0.281e-7■■□□□ 14
SMAD3-204ENST00000540846 IKBKEQ14164 716 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 TCEAL1Q15170 157 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 DUOXA2Q1HG44 320 aa13.32□□□□□ -0.28
SMAD3-204ENST00000540846 MEI1Q5TIA1 1274 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms