RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 TOP6BLQ8N6T0 577 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 TATDN2Q93075 761 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 FAM81BQ96LP2 452 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 PPP1R9BQ96SB3 815 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 DNAJC7Q99615 494 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 ZBED2Q9BTP6 218 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 MMRN2Q9H8L6 949 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 CYP3A43Q9HB55 503 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 FAM207AQ9NSI2 230 aaPredicted RBP11.32□□□□□ -0.6
VPS33A-204ENST00000540669 CAPN11Q9UMQ6 739 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 L1RE1Q9UN81 338 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 PCDHA11Q9Y5I1 949 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 REV3LO60673 3130 aa11.32□□□□□ -0.6
VPS33A-204ENST00000540669 KPNA7A9QM74 516 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 TBC1D4O60343 1298 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 MFAP3LO75121 409 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 UPP2O95045 317 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 TYMPP19971 482 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 FGFR3P22607 806 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 WARSP23381 471 aaKnown RBP11.31□□□□□ -0.6
VPS33A-204ENST00000540669 TBXAS1P24557 533 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-204ENST00000540669 MRPL58Q14197 206 aaKnown RBP11.31□□□□□ -0.6
VPS33A-204ENST00000540669 BTG3Q14201 252 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-204ENST00000540669 MEA1Q16626 185 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 PAN2Q504Q3 1202 aaKnown RBP11.31□□□□□ -0.6
VPS33A-204ENST00000540669 ZNF667Q5HYK9 610 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 KCNT2Q6UVM3 1135 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 FAM71AQ8IYT1 594 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 TC2NQ8N9U0 490 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 COLGALT1Q8NBJ5 622 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 WHAMMQ8TF30 809 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 SYN2Q92777 582 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-204ENST00000540669 RNF25Q96BH1 459 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-204ENST00000540669 ELMO3Q96BJ8 720 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 IGSF21Q96ID5 467 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 YME1L1Q96TA2 773 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 PKMYT1Q99640 499 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 RTP3Q9BQQ7 232 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 NUP58Q9BVL2 599 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 STK33Q9BYT3 514 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 IMPG2Q9BZV3 1241 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 SMYD3Q9H7B4 428 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 CHST7Q9NS84 486 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 IMPACTQ9P2X3 320 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 ADAM28Q9UKQ2 775 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 POLIQ9UNA4 740 aa11.31□□□□□ -0.6
VPS33A-204ENST00000540669 YBX2Q9Y2T7 364 aaKnown RBP11.31□□□□□ -0.6
VPS33A-204ENST00000540669 RIOK3O14730 519 aaKnown RBP11.3□□□□□ -0.6
VPS33A-204ENST00000540669 SYN3O14994 580 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 CILPO75339 1184 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 PPM1AP35813 382 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 PRKCIP41743 596 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 PLCB3Q01970 1234 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 MYO1EQ12965 1108 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 TRPC3Q13507 836 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 WDR72Q3MJ13 1102 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 HGSNATQ68CP4 663 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 PDXDC1Q6P996 788 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 OSTM1Q86WC4 334 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 NEK11Q8NG66 645 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 SENP8Q96LD8 212 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 ZNF558Q96NG5 402 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 HERC2P3Q9BVR0 1158 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 HMGXB4Q9UGU5 601 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 DNAJC12Q9UKB3 198 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 PCDHB8Q9UN66 801 aa11.3□□□□□ -0.6
VPS33A-204ENST00000540669 SF3B1O75533 1304 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS33A-204ENST00000540669 GRXCR1A8MXD5 290 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 TLL1O43897 1013 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 PHACTR2O75167 634 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 B3GAT3O94766 335 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 OAZ2O95190 189 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 KRT19P08727 400 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 TRIM21P19474 475 aaKnown RBP11.29□□□□□ -0.6
VPS33A-204ENST00000540669 PBX3P40426 434 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 BRCC3P46736 316 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 POLR2FP61218 127 aaKnown RBP11.29□□□□□ -0.6
VPS33A-204ENST00000540669 ZBED6P86452 979 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 TAP1Q03518 808 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 RNASELQ05823 741 aaKnown RBP11.29□□□□□ -0.6
VPS33A-204ENST00000540669 WDR44Q5JSH3 913 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 FAM117BQ6P1L5 589 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 FUT10Q6P4F1 479 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 WDR59Q6PJI9 974 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.29□□□□□ -0.6
VPS33A-204ENST00000540669 TMC6Q7Z403 805 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 SPRED2Q7Z698 418 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 CREBRFQ8IUR6 639 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 TMEM139Q8IV31 216 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 TMEM86AQ8N2M4 240 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 PPM1KQ8N3J5 372 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 PDCL2Q8N4E4 241 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 TTC39CQ8N584 583 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 TWNKQ96RR1 684 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 MRPL45Q9BRJ2 306 aaKnown RBP11.29□□□□□ -0.6
VPS33A-204ENST00000540669 PLVAPQ9BX97 442 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 PBX4Q9BYU1 374 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 GPR62Q9BZJ7 368 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 SLC28A3Q9HAS3 691 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 CISHQ9NSE2 258 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms