RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 CPNE5Q9HCH3 593 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 CALCOCO1Q9P1Z2 691 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 ENTPD2Q9Y5L3 495 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 SETD1BQ9UPS6 1966 aaKnown RBP4.71□□□□□ -1.66
VPS13A-213ENST00000539950 SHTN1A0MZ66 631 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 F2RL2O00254 374 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 KATNA1O75449 491 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 CDK4P11802 303 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 CDK11BP21127 795 aaKnown RBP4.71□□□□□ -1.66
VPS13A-213ENST00000539950 DSC2Q02487 901 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 SNAPC2Q13487 334 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 ODF1Q14990 250 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 PTPRRQ15256 657 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 NBPF8Q3BBV2 869 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 KHDC1Q4VXA5 237 aaKnown RBP4.71□□□□□ -1.66
VPS13A-213ENST00000539950 TSTD2Q5T7W7 516 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 TAPT1Q6NXT6 567 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 MICALCLQ6ZW33 695 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 PGBD1Q96JS3 809 aa4.71□□□□□ -1.66
VPS13A-213ENST00000539950 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.71□□□□□ -1.66
VPS13A-213ENST00000539950 KAT6AQ92794 2004 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 COL3A1P02461 1466 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-213ENST00000539950 WDR27A2RRH5 827 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 CCDC151A5D8V7 595 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 WIPF3A6NGB9 483 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 LRRC14BA6NHZ5 514 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 CGB1A6NKQ9 187 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 LINC00473A8K010 186 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 NT5C1B-RDH14C9J2C7 533 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 ORC4O43929 436 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 WT1P19544 449 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-213ENST00000539950 MALP21145 153 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 GPD1P21695 349 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 LPOP22079 712 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-213ENST00000539950 KRT85P78386 507 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 POU6F2P78424 691 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-213ENST00000539950 PIGFQ07326 219 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 FAM50AQ14320 339 aaKnown RBP4.7□□□□□ -1.66
VPS13A-213ENST00000539950 HLXQ14774 488 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-213ENST00000539950 UAP1L1Q3KQV9 507 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 CCDC93Q567U6 631 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 PPP4R3AQ6IN85 833 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 POC1BQ8TC44 478 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 SARAFQ96BY9 339 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 TRIB1Q96RU8 372 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 MRPS18AQ9NVS2 196 aaKnown RBP4.7□□□□□ -1.66
VPS13A-213ENST00000539950 ST3GAL5Q9UNP4 418 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 MRFAP1Q9Y605 127 aa4.7□□□□□ -1.66
VPS13A-213ENST00000539950 E7ENX8 843 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 POLRMTO00411 1230 aaKnown RBP4.69□□□□□ -1.66
VPS13A-213ENST00000539950 ANXA1P04083 346 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 ITPKBP27987 946 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 NPTX2P47972 431 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 EVA1CP58658 441 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 PSMC1P62191 440 aaKnown RBP4.69□□□□□ -1.66
VPS13A-213ENST00000539950 TAP2Q03519 686 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 SLC4A10Q6U841 1118 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 SLC30A10Q6XR72 485 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 AMIGO2Q86SJ2 522 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 PNMA8AQ86V59 439 aaPredicted RBP4.69□□□□□ -1.66
VPS13A-213ENST00000539950 GLCCI1Q86VQ1 547 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 FAM9AQ8IZU1 332 aaPredicted RBP4.69□□□□□ -1.66
VPS13A-213ENST00000539950 AOPEPQ8N6M6 819 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 B3GALNT2Q8NCR0 500 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 SMOQ99835 787 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 ADAM21Q9UKJ8 722 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 CFAP20Q9Y6A4 193 aaKnown RBP4.69□□□□□ -1.66
VPS13A-213ENST00000539950 TNKSO95271 1327 aa4.69□□□□□ -1.66
VPS13A-213ENST00000539950 SBNO2Q9Y2G9 1366 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 DNAJC9-AS1A6NH13 148 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 PRSS29PA6NIE9 313 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 IGSF3O75054 1194 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 ZRANB2O95218 330 aaKnown RBP eCLIP4.68□□□□□ -1.663e-7■■■■■ 46.6
VPS13A-213ENST00000539950 GJB1P08034 283 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 RHOP08100 348 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 ABCG1P45844 678 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 ADKP55263 362 aaKnown RBP4.68□□□□□ -1.66
VPS13A-213ENST00000539950 KRTAP10-11P60412 298 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 ITIH3Q06033 890 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 SRSF4Q08170 494 aaKnown RBP4.68□□□□□ -1.66
VPS13A-213ENST00000539950 PTPN21Q16825 1174 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 EFCAB2Q5VUJ9 269 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 PAPD7Q5XG87 772 aaKnown RBP4.68□□□□□ -1.66
VPS13A-213ENST00000539950 TTC7BQ86TV6 843 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 PDSS2Q86YH6 399 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 PRPF38AQ8NAV1 312 aaKnown RBP4.68□□□□□ -1.66
VPS13A-213ENST00000539950 ANKS1AQ92625 1134 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 DPF1Q92782 380 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 SCAMP4Q969E2 229 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 SMOC2Q9H3U7 446 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 BRD9Q9H8M2 597 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 KLC4Q9NSK0 619 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 ADGRA2Q96PE1 1338 aa4.68□□□□□ -1.66
VPS13A-213ENST00000539950 A0A0B4J269 797 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 MANSC4A6NHS7 340 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-213ENST00000539950 ZNF785A8K8V0 405 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 RPLP2P05387 115 aaKnown RBP4.67□□□□□ -1.66
VPS13A-213ENST00000539950 PHKA1P46020 1223 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 NXPH1P58417 271 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 AMPD3Q01432 767 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms