RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TNFSF9P41273 254 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 EPHB3P54753 998 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 PPP2R3AQ06190 1150 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 SPAG1Q07617 926 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 DUSP4Q13115 394 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 GAS6Q14393 721 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 TMEM119Q4V9L6 283 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 ERICH6BQ5W0A0 696 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 LAIR1Q6GTX8 287 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 CENPPQ6IPU0 288 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 USP37Q86T82 979 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 SPEM1Q8N4L4 309 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 RTKNQ9BST9 563 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 MKNK1Q9BUB5 465 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 SLITRK6Q9H5Y7 841 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 C8orf33Q9H7E9 229 aaPredicted RBP14.76□□□□□ -0.05
SS18-204ENST00000539244 PARD6AQ9NPB6 346 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 CDV3Q9UKY7 258 aaKnown RBP14.76□□□□□ -0.05
SS18-204ENST00000539244 ODF2LQ9ULJ1 636 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 ASB3Q9Y575 518 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 TIMM13Q9Y5L4 95 aaPredicted RBP14.76□□□□□ -0.05
SS18-204ENST00000539244 TPRP12270 2363 aaKnown RBP14.76□□□□□ -0.05
SS18-204ENST00000539244 TSC2P49815 1807 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 MYBPHLA2RUH7 354 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 MTMR11A4FU01 709 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 LACTBL1A8MY62 500 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 SLC26A4O43511 780 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 WEE1P30291 646 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 ALDH1A3P47895 512 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 CXCL12P48061 93 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 SATB1Q01826 763 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 LRRC32Q14392 662 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 ENOX2Q16206 610 aaKnown RBP14.75□□□□□ -0.05
SS18-204ENST00000539244 ARSHQ5FYA8 562 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 SPATA1Q5VX52 437 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 ARL6IP4Q66PJ3 421 aaKnown RBP14.75□□□□□ -0.05
SS18-204ENST00000539244 OVOS1Q6IE37 1185 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 GAREM2Q75VX8 874 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 HAUS6Q7Z4H7 955 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 CSGALNACT1Q8TDX6 532 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 PSMG2Q969U7 264 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 PGLYRP2Q96PD5 576 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 OBP2AQ9NY56 170 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 RAB23Q9ULC3 237 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 USP18Q9UMW8 372 aa14.75□□□□□ -0.05
SS18-204ENST00000539244 OGTO15294 1046 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 FGF19O95750 216 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 RETP07949 1114 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 CNR2P34972 360 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 MATR3P43243 847 aaKnown RBP eCLIP14.74□□□□□ -0.05
SS18-204ENST00000539244 LIG4P49917 911 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 ZNF131P52739 623 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 LILRA4P59901 499 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 ZRSR1Q15695 479 aaKnown RBP14.74□□□□□ -0.05
SS18-204ENST00000539244 WDR44Q5JSH3 913 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 DGKKQ5KSL6 1271 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 STXBP5Q5T5C0 1151 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 DSTYKQ6XUX3 929 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 DNAJB7Q7Z6W7 309 aaPredicted RBP14.74□□□□□ -0.05
SS18-204ENST00000539244 RALGPS2Q86X27 583 aaPredicted RBP14.74□□□□□ -0.05
SS18-204ENST00000539244 ARID3BQ8IVW6 561 aaPredicted RBP14.74□□□□□ -0.05
SS18-204ENST00000539244 CD302Q8IX05 232 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 YAF2Q8IY57 180 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 BICD1Q96G01 975 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 RPF1Q9H9Y2 349 aaKnown RBP14.74□□□□□ -0.05
SS18-204ENST00000539244 TBX20Q9UMR3 447 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 KIF3AQ9Y496 699 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 ANK1P16157 1881 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 CACNA1BQ00975 2339 aa14.74□□□□□ -0.05
SS18-204ENST00000539244 A0A0B4J269 797 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 NPHP3-ACAD11A0A0J9YXS1 232 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 VWA3AA6NCI4 1184 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 K7ESF4 209 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 HNRNPDLO14979 420 aaKnown RBP14.73□□□□□ -0.05
SS18-204ENST00000539244 CYP11A1P05108 521 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 ODC1P11926 461 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 HOXA6P31267 233 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 CTHP32929 405 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 GUCY2FP51841 1108 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 CACNB1Q02641 598 aaPredicted RBP14.73□□□□□ -0.05
SS18-204ENST00000539244 ARHGAP29Q52LW3 1261 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 ITIH5Q86UX2 942 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 TTC9BQ8N6N2 239 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 ATAD1Q8NBU5 361 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 CDK5RAP3Q96JB5 506 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 SENP8Q96LD8 212 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 AK8Q96MA6 479 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 LRRC3BQ96PB8 259 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 PLIN2Q99541 437 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 REEP2Q9BRK0 252 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 CPSF3Q9UKF6 684 aaKnown RBP14.73□□□□□ -0.05
SS18-204ENST00000539244 SLC27A5Q9Y2P5 690 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 DERAQ9Y315 318 aa14.73□□□□□ -0.05
SS18-204ENST00000539244 KIF26AQ9ULI4 1882 aaPredicted RBP14.73□□□□□ -0.05
SS18-204ENST00000539244 SCN1AP35498 2009 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 RALGAPA1Q6GYQ0 2036 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 ANO9A1A5B4 782 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 SLC38A8A6NNN8 435 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 SPECC1L-ADORA2AF8WAN1 911 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 PIRO00625 290 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms