RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 BMP2KQ9NSY1 1161 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 RBM12Q9NTZ6 932 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 MAST4O15021 2626 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 NCANO14594 1321 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 ARHGEF37A1IGU5 675 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 ARHGEF35A5YM69 484 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 GIPC1O14908 333 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 MICAL2O94851 1124 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 ERLIN2O94905 339 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 EPN2O95208 641 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 TOP3BO95985 862 aaKnown RBP13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 SLFN14P0C7P3 912 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 PLA2G4BP0C869 781 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 PTPN2P17706 415 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 PSMC3P17980 439 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 FGFR3P22607 806 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 CCNE1P24864 410 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 GDI1P31150 447 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 YWHABP31946 246 aaKnown RBP13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 CCR2P41597 374 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 MCM6Q14566 821 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 ECM1Q16610 540 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 XKR9Q5GH70 373 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 CCDC183Q5T5S1 534 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 Q6ZS52 159 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 CEP68Q76N32 757 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 C12orf50Q8NA57 414 aaPredicted RBP13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 ENGASEQ8NFI3 743 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 PIGOQ8TEQ8 1089 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 MTRRQ9UBK8 725 aa13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 KIF26AQ9ULI4 1882 aaPredicted RBP13.63□□□□□ -0.23
CLSTN3-208ENST00000538933 WDR27A2RRH5 827 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 TMEM8BA6NDV4 472 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 PTGESO14684 152 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 KALRNO60229 2985 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 MOSPD3O75425 235 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 SPINK2P20155 84 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 RFC5P40937 340 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 MBTD1Q05BQ5 628 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 POU5F1BQ06416 359 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 E2F4Q16254 413 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 CAMK4Q16566 473 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 PDXDC1Q6P996 788 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 CD300LGQ6UXG3 332 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 CDR2LQ86X02 465 aaPredicted RBP13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 EXOC8Q8IYI6 725 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 CCDC47Q96A33 483 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 CEP170P1Q96L14 293 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 BHMT2Q9H2M3 363 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 CLSTN2Q9H4D0 955 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 SMOC1Q9H4F8 434 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 TRPV4Q9HBA0 871 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 ANKEF1Q9NU02 776 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 PPME1Q9Y570 386 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 ATG2BQ96BY7 2078 aa13.62□□□□□ -0.23
CLSTN3-208ENST00000538933 ADAMTS20P59510 1910 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 A0A087WWV3 80 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 A0A1B0GUA9 196 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 CASTOR2A6NHX0 329 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 TAF4O00268 1085 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 B4GALT5O43286 388 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 ACTN4O43707 911 aaKnown RBP13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 LYPLA2O95372 231 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 XRCC6P12956 609 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 VIPR2P41587 438 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 EMC2Q15006 297 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 POSTNQ15063 836 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 KCNK18Q7Z418 384 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 KBTBD6Q86V97 674 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 GPBP1Q86WP2 473 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 TCP11Q8WWU5 503 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 GAB3Q8WWW8 586 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 SMARCD2Q92925 531 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 ADAM33Q9BZ11 813 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 XPNPEP1Q9NQW7 623 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 BLOC1S4Q9NUP1 217 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 LHX6Q9UPM6 363 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 BACE2Q9Y5Z0 518 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 CDY1Q9Y6F8 540 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 PCNX2A6NKB5 2137 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 NUP205Q92621 2012 aa13.61□□□□□ -0.23
CLSTN3-208ENST00000538933 ZBTB39O15060 712 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 ABLIM3O94929 683 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 SMC2O95347 1197 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 NPTXRO95502 500 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 ASIC1P78348 528 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 NCBP1Q09161 790 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 ELAVL2Q12926 359 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 SLC27A1Q6PCB7 646 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 TXNDC11Q6PKC3 985 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 CACNA2D4Q7Z3S7 1137 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 MFSD6LQ8IWD5 586 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 HACE1Q8IYU2 909 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 RSPRY1Q96DX4 576 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 PAGE5Q96GU1 130 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 ZC3H10Q96K80 434 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 TRIM6Q9C030 488 aaPredicted RBP13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 ZHX3Q9H4I2 956 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 PARP2Q9UGN5 583 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms