RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 SIX1Q15475 284 aaPredicted RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 UAP1Q16222 522 aaPredicted RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 CCNG2Q16589 344 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ZNF792Q3KQV3 632 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 DCAF4L1Q3SXM0 396 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 KRT71Q3SY84 523 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ZNF667Q5HYK9 610 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ZBTB41Q5SVQ8 909 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 EFCAB12Q6NXP0 572 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 LRRC31Q6UY01 552 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 MICALCLQ6ZW33 695 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 B4GALNT4Q76KP1 1039 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 TRMT10CQ7L0Y3 403 aaKnown RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 EEPD1Q7L9B9 569 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 POLNQ7Z5Q5 900 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ADAT2Q7Z6V5 191 aaKnown RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 ANKRD23Q86SG2 305 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ZBTB33Q86T24 672 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ZNF410Q86VK4 478 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 DDX42Q86XP3 938 aaKnown RBP eCLIP7.04□□□□□ -1.28
USP28-206ENST00000538224 CCDC50Q8IVM0 306 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 LRRC71Q8N4P6 559 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 NIPA2Q8N8Q9 360 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 CCDC89Q8N998 374 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 FEZF2Q8TBJ5 459 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 FNIP1Q8TF40 1166 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 CPA5Q8WXQ8 436 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 UPF1Q92900 1129 aaKnown RBP eCLIP7.04□□□□□ -1.28
USP28-206ENST00000538224 ART4Q93070 314 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ARL8AQ96BM9 186 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 SLC10A4Q96EP9 437 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 SNF8Q96H20 258 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 NLRP4Q96MN2 994 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ADPGKQ9BRR6 497 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 BCO2Q9BYV7 579 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 FRMD8P1Q9BZ68 369 aaPredicted RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 CDT1Q9H211 546 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 NEUROG2Q9H2A3 272 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 LHX5Q9H2C1 402 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 PLEKHA4Q9H4M7 779 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 VRTNQ9H8Y1 702 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 PTPRHQ9HD43 1115 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 TXNRD2Q9NNW7 524 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ACP6Q9NPH0 428 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 CISHQ9NSE2 258 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 SLC5A4Q9NY91 659 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 MORF4L1Q9UBU8 362 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ASIC3Q9UHC3 531 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ATP8A1Q9Y2Q0 1164 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 NFS1Q9Y697 457 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 TRPM7Q96QT4 1865 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 TJP3O95049 919 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 AGTP01019 485 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 LGALS2P05162 132 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 HOXD8P13378 290 aaPredicted RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 ATF2P15336 505 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 DESP17661 470 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 TNFSF9P41273 254 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 RPL21P46778 160 aaKnown RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 MYL6P60660 151 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 PPP2R2AP63151 447 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 DRP2Q13474 957 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 MAMLD1Q13495 774 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 BYSLQ13895 437 aaKnown RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 ACAP1Q15027 740 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 STILQ15468 1287 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 DNAJC21Q5F1R6 531 aaKnown RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 C6orf118Q5T5N4 469 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 TTC27Q6P3X3 843 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 DRICH1Q6PGQ1 229 aaPredicted RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 DCUN1D2Q6PH85 259 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 MAMDC4Q6UXC1 1216 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 MMS22LQ6ZRQ5 1243 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 ZNF365Q70YC5 407 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 TAOK1Q7L7X3 1001 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 ERICH1Q86X53 443 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 TRIM50Q86XT4 487 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 PASD1Q8IV76 773 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 RCOR2Q8IZ40 523 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 ATL2Q8NHH9 583 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 FBXO25Q8TCJ0 367 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 FAM212AQ96EL1 285 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 PGM2Q96G03 612 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 DDX27Q96GQ7 796 aaKnown RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 BTBD6Q96KE9 485 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 PARK7Q99497 189 aaKnown RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 NCAPGQ9BPX3 1015 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 TRAIPQ9BWF2 469 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 OSBPL8Q9BZF1 889 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 ROPN1BQ9BZX4 212 aaPredicted RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 TRIM31Q9BZY9 425 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 DCLK3Q9C098 648 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 RNF39Q9H2S5 420 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 ROPN1Q9HAT0 212 aaPredicted RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.03□□□□□ -1.28
USP28-206ENST00000538224 GRHL1Q9NZI5 618 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 ITGA11Q9UKX5 1188 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 KIAA1257Q9ULG3 409 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 AKT3Q9Y243 479 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 EFR3BQ9Y2G0 817 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms