RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 OAZ3Q9UMX2 235 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 PCDHA6Q9UN73 950 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 MYRFQ9Y2G1 1151 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 TBC1D30Q9Y2I9 924 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 SH3BP1Q9Y3L3 701 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 CXorf49A8MYA2 514 aaPredicted RBP3.9□□□□□ -1.79
CD44-229ENST00000528672 NT5C1B-RDH14C9J2C7 533 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 MYO1FO00160 1098 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 FFAR2O15552 330 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 DAPK3O43293 454 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 CSTBP04080 98 aaKnown RBP3.9□□□□□ -1.79
CD44-229ENST00000528672 THP07101 528 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 VSIG10L2P0DP72 767 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 RAP2AP10114 183 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 TSHRP16473 764 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 HDCP19113 662 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 HK1P19367 917 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 DDCP20711 480 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 MALP21145 153 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 SELENOPP49908 381 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 DUSP2Q05923 314 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 FOXD4Q12950 439 aaPredicted RBP3.9□□□□□ -1.79
CD44-229ENST00000528672 PPFIA1Q13136 1202 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 GRM1Q13255 1194 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 GAGE13Q4V321 117 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 KHDC1LQ5JSQ8 128 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 GGT6Q6P531 493 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 LVRNQ6Q4G3 990 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 PCGF5Q86SE9 256 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 SESTD1Q86VW0 696 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 MB21D1Q8N884 522 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 SHCBP1Q8NEM2 672 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 OR7D4Q8NG98 312 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 BRIX1Q8TDN6 353 aaKnown RBP3.9□□□□□ -1.79
CD44-229ENST00000528672 ZNF480Q8WV37 535 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 GCC1Q96CN9 775 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 CYFIP2Q96F07 1278 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 TBATAQ96M53 351 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 CDC5LQ99459 802 aaKnown RBP3.9□□□□□ -1.79
CD44-229ENST00000528672 COLEC11Q9BWP8 271 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 TTLL2Q9BWV7 592 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 TMX4Q9H1E5 349 aaPredicted RBP3.9□□□□□ -1.79
CD44-229ENST00000528672 SLC6A15Q9H2J7 730 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 WDCPQ9H6R7 721 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 CD248Q9HCU0 757 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 PIH1D1Q9NWS0 290 aaKnown RBP3.9□□□□□ -1.79
CD44-229ENST00000528672 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.9□□□□□ -1.79
CD44-229ENST00000528672 CPNE7Q9UBL6 633 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 PGAP2Q9UHJ9 254 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 FEZ2Q9UHY8 353 aaPredicted RBP3.9□□□□□ -1.79
CD44-229ENST00000528672 ST6GALNAC2Q9UJ37 374 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 AGAP1Q9UPQ3 857 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 TSC22D4Q9Y3Q8 395 aa3.9□□□□□ -1.79
CD44-229ENST00000528672 A0A1W2PRX2 142 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 PRRT4C9JH25 899 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 F8W8V4 182 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 F2RL2O00254 374 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 LEFTY2O00292 366 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 RAD17O75943 681 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 FTH1P19P0C7X4 201 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 HARSP12081 509 aaKnown RBP3.89□□□□□ -1.79
CD44-229ENST00000528672 CR2P20023 1033 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 BDNFP23560 247 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 MAN1A1P33908 653 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 MSX2P35548 267 aaPredicted RBP3.89□□□□□ -1.79
CD44-229ENST00000528672 HSPA7P48741 367 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 ADAM17P78536 824 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 APBA1Q02410 837 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 TLE1Q04724 770 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 PMS2P11Q13670 270 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 ICAM4Q14773 271 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 HS1BP3Q53T59 392 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 C19orf54Q5BKX5 351 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 DACT2Q5SW24 774 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 KLHDC7AQ5VTJ3 777 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 C1QL3Q5VWW1 255 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 JAKMIP3Q5VZ66 844 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 Q6ZRM9 215 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 ANKRD18AQ8IVF6 992 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 CMTM4Q8IZR5 234 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 TXLNBQ8N3L3 684 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 ZNF808Q8N4W9 903 aaPredicted RBP3.89□□□□□ -1.79
CD44-229ENST00000528672 RNF152Q8N8N0 203 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 ATP11CQ8NB49 1132 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 PCSK9Q8NBP7 692 aaKnown RBP3.89□□□□□ -1.79
CD44-229ENST00000528672 NSUN7Q8NE18 718 aaKnown RBP3.89□□□□□ -1.79
CD44-229ENST00000528672 EDAQ92838 391 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 ZNF566Q969W8 418 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 TBC1D20Q96BZ9 403 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 MPP4Q96JB8 637 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 MSLNLQ96KJ4 702 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 P2RX7Q99572 595 aaKnown RBP3.89□□□□□ -1.79
CD44-229ENST00000528672 PAGR1Q9BTK6 254 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 SENP6Q9GZR1 1112 aaPredicted RBP3.89□□□□□ -1.79
CD44-229ENST00000528672 SACM1LQ9NTJ5 587 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 GJB4Q9NTQ9 266 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 SAGE1Q9NXZ1 904 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 GPR52Q9Y2T5 361 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 TESMINQ9Y4I5 508 aa3.89□□□□□ -1.79
CD44-229ENST00000528672 TMEM233B4DJY2 109 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms