RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 AFF4Q9UHB7 1163 aaKnown RBP11.53□□□□□ -0.56
CD44-227ENST00000528086 EXOC7Q9UPT5 735 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 INSL5Q9Y5Q6 135 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 OBSL1O75147 1896 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 PTPRDP23468 1912 aa11.52□□□□□ -0.56
CD44-227ENST00000528086 GREB1Q4ZG55 1949 aa11.52□□□□□ -0.56
CD44-227ENST00000528086 COL4A2P08572 1712 aa11.52□□□□□ -0.56
CD44-227ENST00000528086 A0A1W2PQ27 194 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 A0A1W2PQ64 194 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 A0A1W2PQD8 194 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 SPDYE4A6NLX3 237 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 H7C4K7 107 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 SOAT2O75908 522 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 IL18RAPO95256 599 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 RHOP08100 348 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 NPR3P17342 541 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 CEBPBP17676 345 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 FSHRP23945 695 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 POLR2BP30876 1174 aaKnown RBP11.52□□□□□ -0.57
CD44-227ENST00000528086 GBP2P32456 591 aaPredicted RBP11.52□□□□□ -0.57
CD44-227ENST00000528086 YWHAHQ04917 246 aaPredicted RBP11.52□□□□□ -0.57
CD44-227ENST00000528086 GPR17Q13304 367 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 KMT5BQ4FZB7 885 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 LIN9Q5TKA1 542 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 TPGS2Q68CL5 300 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 CENPPQ6IPU0 288 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 ZNF280DQ6N043 979 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 ARMCX5Q6P1M9 558 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 SYCP3Q8IZU3 236 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 GPD1LQ8N335 351 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 SLC44A3Q8N4M1 653 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 ING5Q8WYH8 240 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 PGLYRP2Q96PD5 576 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 PKMYT1Q99640 499 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 MTMR12Q9C0I1 747 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 KCTD10Q9H3F6 313 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 PIDD1Q9HB75 910 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 INTS13Q9NVM9 706 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 DMAC2Q9NW81 257 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 FAM13BQ9NYF5 915 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 DPP7Q9UHL4 492 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 L1RE1Q9UN81 338 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 VPS13AQ96RL7 3174 aa11.52□□□□□ -0.57
CD44-227ENST00000528086 MTMR11A4FU01 709 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 KRBA1A5PL33 1030 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 SHISA7A6NL88 538 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 CYB561D2O14569 222 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 ITGB3P05106 788 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 FCARP24071 287 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 EPHA5P54756 1037 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 TFAMQ00059 246 aaKnown RBP11.51□□□□□ -0.57
CD44-227ENST00000528086 AMPD3Q01432 767 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 DPYDQ12882 1025 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 DUSP4Q13115 394 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 TDGQ13569 410 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 CWF19L1Q69YN2 538 aaKnown RBP11.51□□□□□ -0.57
CD44-227ENST00000528086 OVOS1Q6IE37 1185 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 DSTYKQ6XUX3 929 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 RTL10Q7L3V2 364 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 TMC8Q8IU68 726 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 C12orf56Q8IXR9 622 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 PDCL2Q8N4E4 241 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 FSIP1Q8NA03 581 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 PBXIP1Q96AQ6 731 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 ACSF2Q96CM8 615 aaPredicted RBP11.51□□□□□ -0.57
CD44-227ENST00000528086 ZSWIM3Q96MP5 696 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 PLA2G2FQ9BZM2 168 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 LRRC27Q9C0I9 530 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 ZCWPW1Q9H0M4 648 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 CYP4F11Q9HBI6 524 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 AVENQ9NQS1 362 aaPredicted RBP11.51□□□□□ -0.57
CD44-227ENST00000528086 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.51□□□□□ -0.57
CD44-227ENST00000528086 CDH7Q9ULB5 785 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 POLIQ9UNA4 740 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 DUSP12Q9UNI6 340 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 AGAP1Q9UPQ3 857 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 SLC27A5Q9Y2P5 690 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 YIPF1Q9Y548 306 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 NUMBLQ9Y6R0 609 aa11.51□□□□□ -0.57
CD44-227ENST00000528086 OR6C75A6NL08 312 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 KPNA7A9QM74 516 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 XPOTO43592 962 aaKnown RBP11.5□□□□□ -0.57
CD44-227ENST00000528086 PI15O43692 258 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 LDHAP00338 332 aaKnown RBP11.5□□□□□ -0.57
CD44-227ENST00000528086 CST3P01034 146 aaPredicted RBP11.5□□□□□ -0.57
CD44-227ENST00000528086 GJA1P17302 382 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 CASP4P49662 377 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 TAF6P49848 677 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 CYP2J2P51589 502 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 CYP24A1Q07973 514 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 TWF1Q12792 350 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 SNW1Q13573 536 aaKnown RBP11.5□□□□□ -0.57
CD44-227ENST00000528086 MTMR3Q13615 1198 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 MYBPC2Q14324 1141 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 KNOP1Q1ED39 458 aaKnown RBP11.5□□□□□ -0.57
CD44-227ENST00000528086 SOWAHAQ2M3V2 549 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 PABPC1LQ4VXU2 614 aaKnown RBP11.5□□□□□ -0.57
CD44-227ENST00000528086 C1orf220Q5T0J3 134 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 KRBA2Q6ZNG9 492 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 NT5DC4Q86YG4 428 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms