RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 GAB3Q8WWW8 586 aa11.49□□□□□ -0.57
CPSF1-203ENST00000527916 ZSWIM3Q96MP5 696 aa11.49□□□□□ -0.57
CPSF1-203ENST00000527916 ACO2Q99798 780 aaKnown RBP11.49□□□□□ -0.57
CPSF1-203ENST00000527916 KIFC3Q9BVG8 833 aa11.49□□□□□ -0.57
CPSF1-203ENST00000527916 RUSC1Q9BVN2 902 aa11.49□□□□□ -0.57
CPSF1-203ENST00000527916 MRPL4Q9BYD3 311 aaKnown RBP11.49□□□□□ -0.57
CPSF1-203ENST00000527916 POLD4Q9HCU8 107 aa11.49□□□□□ -0.57
CPSF1-203ENST00000527916 KMT5AQ9NQR1 393 aa11.49□□□□□ -0.57
CPSF1-203ENST00000527916 ASAH2Q9NR71 780 aa11.49□□□□□ -0.57
CPSF1-203ENST00000527916 RBM12Q9NTZ6 932 aaKnown RBP11.49□□□□□ -0.57
CPSF1-203ENST00000527916 INSL5Q9Y5Q6 135 aa11.49□□□□□ -0.57
CPSF1-203ENST00000527916 CCDC163A0A0D9SF12 145 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 SLC38A8A6NNN8 435 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 ARNTLO00327 626 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 CHADO15335 359 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 MYL4P12829 197 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 PLS3P13797 630 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 HOXB3P14651 431 aaPredicted RBP11.48□□□□□ -0.57
CPSF1-203ENST00000527916 LIG1P18858 919 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 SCP2P22307 547 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 PROZP22891 400 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 LONP1P36776 959 aaKnown RBP11.48□□□□□ -0.57
CPSF1-203ENST00000527916 GRM5P41594 1212 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 CCR2P41597 374 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 RAP1GAPP47736 663 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 NOVA1P51513 510 aaKnown RBP11.48□□□□□ -0.57
CPSF1-203ENST00000527916 UPP1Q16831 310 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 TMEM119Q4V9L6 283 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 XKR4Q5GH76 650 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 ALKAL1Q6UXT8 129 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 Q6ZS52 159 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 HAUS6Q7Z4H7 955 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 BACH2Q9BYV9 841 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 VPS45Q9NRW7 570 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 RXFP3Q9NSD7 469 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 MAFFQ9ULX9 164 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 USP20Q9Y2K6 914 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 GDAQ9Y2T3 454 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 COL4A2P08572 1712 aa11.48□□□□□ -0.57
CPSF1-203ENST00000527916 PDCD11Q14690 1871 aaKnown RBP11.48□□□□□ -0.57
CPSF1-203ENST00000527916 WDFY3Q8IZQ1 3526 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 MYBPHLA2RUH7 354 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 SOBPA7XYQ1 873 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 SPECC1L-ADORA2AF8WAN1 911 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 I3L4J1 428 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 SYN3O14994 580 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 AKAP3O75969 853 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 PLA2G4BP0C869 781 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 MCF2P10911 925 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 CTHP32929 405 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 UBA7P41226 1012 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 SMTNP53814 917 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 FCHO2Q0JRZ9 810 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 GLRA4Q5JXX5 417 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 PLA2G2CQ5R387 149 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 DAB2IPQ5VWQ8 1189 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 ZPBP2Q6X784 338 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 TAS1R3Q7RTX0 852 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 KBTBD6Q86V97 674 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 CALML4Q96GE6 196 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 INTS4Q96HW7 963 aaKnown RBP11.47□□□□□ -0.57
CPSF1-203ENST00000527916 CDK5RAP3Q96JB5 506 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 PPP1R10Q96QC0 940 aaKnown RBP11.47□□□□□ -0.57
CPSF1-203ENST00000527916 CCDC94Q9BW85 323 aaPredicted RBP11.47□□□□□ -0.57
CPSF1-203ENST00000527916 TOPORSQ9NS56 1045 aaPredicted RBP11.47□□□□□ -0.57
CPSF1-203ENST00000527916 LARSQ9P2J5 1176 aaKnown RBP11.47□□□□□ -0.57
CPSF1-203ENST00000527916 ODF2LQ9ULJ1 636 aa11.47□□□□□ -0.57
CPSF1-203ENST00000527916 AKAP13Q12802 2813 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 SMIM28A0A1B0GU29 152 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 SFI1A8K8P3 1242 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 H0YCG3 227 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 NRG2O14511 850 aaPredicted RBP11.46□□□□□ -0.57
CPSF1-203ENST00000527916 DPYSL4O14531 572 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 ABLIM1O14639 778 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 SLC16A4O15374 487 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 ATG13O75143 517 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 SEC24AO95486 1093 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 MPLP40238 635 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 BRCC3P46736 316 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 SOX9P48436 509 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 YARSP54577 528 aaKnown RBP11.46□□□□□ -0.57
CPSF1-203ENST00000527916 EPHA5P54756 1037 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 TWF1Q12792 350 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 FOXC1Q12948 553 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 STRN3Q13033 797 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 SF3A1Q15459 793 aaKnown RBP11.46□□□□□ -0.57
CPSF1-203ENST00000527916 TEAD2Q15562 447 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 ZRSR1Q15695 479 aaKnown RBP11.46□□□□□ -0.57
CPSF1-203ENST00000527916 ARHGAP29Q52LW3 1261 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 ARSHQ5FYA8 562 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 MPZL3Q6UWV2 235 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 HS6ST3Q8IZP7 471 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 TMEM161BQ8NDZ6 487 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 TARS2Q9BW92 718 aaKnown RBP11.46□□□□□ -0.57
CPSF1-203ENST00000527916 ADAM33Q9BZ11 813 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 CCSER1Q9C0I3 900 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 CDT1Q9H211 546 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 CXCL16Q9H2A7 254 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 SLC38A7Q9NVC3 462 aa11.46□□□□□ -0.57
CPSF1-203ENST00000527916 SLC8A2Q9UPR5 921 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms