RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 LARSQ9P2J5 1176 aaKnown RBP25.63■■□□□ 1.69
CPSF1-202ENST00000527827 GTF3C5Q9Y5Q8 519 aaPredicted RBP25.63■■□□□ 1.69
CPSF1-202ENST00000527827 TSC2P49815 1807 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 NUP210Q8TEM1 1887 aaPredicted RBP25.62■■□□□ 1.69
CPSF1-202ENST00000527827 VWA3AA6NCI4 1184 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 SATB1Q01826 763 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 FCHO2Q0JRZ9 810 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 PPP2R5DQ14738 602 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 ENOX2Q16206 610 aaKnown RBP25.62■■□□□ 1.69
CPSF1-202ENST00000527827 CENPPQ6IPU0 288 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 DSTYKQ6XUX3 929 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 MKNK1Q9BUB5 465 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 GMEB2Q9UKD1 530 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 USP18Q9UMW8 372 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 SLC27A5Q9Y2P5 690 aa25.62■■□□□ 1.69
CPSF1-202ENST00000527827 MTMR11A4FU01 709 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 H0YCG3 227 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 CHADO15335 359 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 ADRB2P07550 413 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 TYMPP19971 482 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 EPHB3P54753 998 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 MYBPC2Q14324 1141 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 LPAL2Q16609 132 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 WDR44Q5JSH3 913 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 MCTP1Q6DN14 999 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 OVOS1Q6IE37 1185 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 GPIHBP1Q8IV16 184 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 TTC9BQ8N6N2 239 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 CELF5Q8N6W0 485 aaKnown RBP25.61■■□□□ 1.69
CPSF1-202ENST00000527827 ATAD1Q8NBU5 361 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 LRRC3BQ96PB8 259 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 TMEM209Q96SK2 561 aa25.61■■□□□ 1.69
CPSF1-202ENST00000527827 ALDH1A3P47895 512 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 CXCL12P48061 93 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 SOX9P48436 509 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 LIG4P49917 911 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 SPATA1Q5VX52 437 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 GAREM2Q75VX8 874 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 ARID3BQ8IVW6 561 aaPredicted RBP25.6■■□□□ 1.69
CPSF1-202ENST00000527827 YAF2Q8IY57 180 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 CSGALNACT1Q8TDX6 532 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 MSANTD3Q96H12 275 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 CDK5RAP3Q96JB5 506 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 RBM12Q9NTZ6 932 aaKnown RBP25.6■■□□□ 1.69
CPSF1-202ENST00000527827 CDV3Q9UKY7 258 aaKnown RBP25.6■■□□□ 1.69
CPSF1-202ENST00000527827 TBX20Q9UMR3 447 aa25.6■■□□□ 1.69
CPSF1-202ENST00000527827 SLC38A8A6NNN8 435 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 OGTO15294 1046 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 XPOTO43592 962 aaKnown RBP25.59■■□□□ 1.69
CPSF1-202ENST00000527827 PIGRP01833 764 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 LILRA4P59901 499 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 KYAT1Q16773 422 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 LAIR1Q6GTX8 287 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 DNAJB7Q7Z6W7 309 aaPredicted RBP25.59■■□□□ 1.69
CPSF1-202ENST00000527827 SPEM1Q8N4L4 309 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 REEP2Q9BRK0 252 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 C8orf33Q9H7E9 229 aaPredicted RBP25.59■■□□□ 1.69
CPSF1-202ENST00000527827 RPF1Q9H9Y2 349 aaKnown RBP25.59■■□□□ 1.69
CPSF1-202ENST00000527827 RAB23Q9ULC3 237 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 ODF2LQ9ULJ1 636 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 ASB3Q9Y575 518 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 SCN1AP35498 2009 aa25.59■■□□□ 1.69
CPSF1-202ENST00000527827 TPRP12270 2363 aaKnown RBP25.59■■□□□ 1.69
CPSF1-202ENST00000527827 KIF26AQ9ULI4 1882 aaPredicted RBP25.58■■□□□ 1.69
CPSF1-202ENST00000527827 HNRNPDLO14979 420 aaKnown RBP25.58■■□□□ 1.69
CPSF1-202ENST00000527827 SOAT2O75908 522 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 DMWDQ09019 674 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 SPEM2Q0P670 501 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 ARL6IP4Q66PJ3 421 aaKnown RBP25.58■■□□□ 1.69
CPSF1-202ENST00000527827 JADE1Q6IE81 842 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 C1orf228Q6PIY5 440 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 TXNDC11Q6PKC3 985 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 LRRC15Q8TF66 581 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 PSMG2Q969U7 264 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 SENP8Q96LD8 212 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 TSPAN18Q96SJ8 248 aa25.58■■□□□ 1.69
CPSF1-202ENST00000527827 A0A0B4J269 797 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 MYBPHLA2RUH7 354 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 KPNA1P52294 538 aaPredicted RBP25.57■■□□□ 1.68
CPSF1-202ENST00000527827 LRRC32Q14392 662 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 ERICH6BQ5W0A0 696 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 SLC39A4Q6P5W5 647 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 GPBP1Q86WP2 473 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 ZFYVE19Q96K21 471 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 RTKNQ9BST9 563 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 ATXN3LQ9H3M9 355 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 CPSF3Q9UKF6 684 aaKnown RBP25.57■■□□□ 1.68
CPSF1-202ENST00000527827 KIF3AQ9Y496 699 aa25.57■■□□□ 1.68
CPSF1-202ENST00000527827 RALGAPA1Q6GYQ0 2036 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 DCDC2BA2VCK2 349 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 CHURC1-FNTBB4DL54 471 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 SPECC1L-ADORA2AF8WAN1 911 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 K7ENM7 598 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 K7ESF4 209 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 HRO43593 1189 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 PAPSS2O95340 614 aaPredicted RBP25.56■■□□□ 1.68
CPSF1-202ENST00000527827 RETP07949 1114 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 ODC1P11926 461 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 GABRR2P28476 465 aa25.56■■□□□ 1.68
CPSF1-202ENST00000527827 FNTBP49356 437 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms