RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 IGSF9Q9P2J2 1179 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 EPS15L1Q9UBC2 864 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 KPNA7A9QM74 516 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 TMEM191BP0C7N4 346 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 PTPN2P17706 415 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 POLR2BP30876 1174 aaKnown RBP22.56■■□□□ 1.2
VPS28-203ENST00000524521 CYP2J2P51589 502 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 SNRPFP62306 86 aaKnown RBP22.56■■□□□ 1.2
VPS28-203ENST00000524521 STK4Q13043 487 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 PSMD2Q13200 908 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 SURF1Q15526 300 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 KNOP1Q1ED39 458 aaKnown RBP22.56■■□□□ 1.2
VPS28-203ENST00000524521 SV2CQ496J9 727 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 PABPC1LQ4VXU2 614 aaKnown RBP22.56■■□□□ 1.2
VPS28-203ENST00000524521 LMBRD2Q68DH5 695 aaPredicted RBP22.56■■□□□ 1.2
VPS28-203ENST00000524521 C1orf127Q8N9H9 656 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 RSAD2Q8WXG1 361 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 BORCS6Q96GS4 357 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 MFSD14AQ96MC6 490 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 ZNF560Q96MR9 790 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 PGLYRP2Q96PD5 576 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 GOLPH3LQ9H4A5 285 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 DSEQ9UL01 958 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 MAFFQ9ULX9 164 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 INSL5Q9Y5Q6 135 aa22.56■■□□□ 1.2
VPS28-203ENST00000524521 CYP11A1P05108 521 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 MYL1P05976 194 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 KRT19P08727 400 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 PNPLA4P41247 253 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 GPR17Q13304 367 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 TDGQ13569 410 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 BMT2Q1RMZ1 405 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 BMP8AQ7Z5Y6 402 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 ITFG1Q8TB96 612 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 ASIC4Q96FT7 647 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 ANKRD36BP1Q96IX9 119 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 MTMR12Q9C0I1 747 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 ITGA11Q9UKX5 1188 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 CDH7Q9ULB5 785 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 HCN4Q9Y3Q4 1203 aa22.55■■□□□ 1.2
VPS28-203ENST00000524521 RHOP08100 348 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 MYBPC2Q14324 1141 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 SNRNP35Q16560 246 aaKnown RBP22.54■■□□□ 1.2
VPS28-203ENST00000524521 WSCD1Q658N2 575 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 SCARA3Q6AZY7 606 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 KRBA2Q6ZNG9 492 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 THEM5Q8N1Q8 247 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 XXYLT1Q8NBI6 393 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 ST13P5Q8NFI4 369 aaPredicted RBP22.54■■□□□ 1.2
VPS28-203ENST00000524521 TMEM209Q96SK2 561 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 CORO1BQ9BR76 489 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 INTS13Q9NVM9 706 aa22.54■■□□□ 1.2
VPS28-203ENST00000524521 CGNQ9P2M7 1197 aaKnown RBP22.54■■□□□ 1.2
VPS28-203ENST00000524521 R3HCC1Q9Y3T6 440 aaKnown RBP22.54■■□□□ 1.2
VPS28-203ENST00000524521 ZFP37Q9Y6Q3 630 aaPredicted RBP22.54■■□□□ 1.2
VPS28-203ENST00000524521 DOCK8Q8NF50 2099 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 ZNF202O95125 648 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 TNNC2P02585 160 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 RPN1P04843 607 aaKnown RBP22.53■■□□□ 1.2
VPS28-203ENST00000524521 PRR29P0C7W0 189 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 RBP5P82980 135 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 TWF1Q12792 350 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 BFSP1Q12934 665 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 DUSP4Q13115 394 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 DUOXA2Q1HG44 320 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 ELMOD1Q8N336 334 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 OR5B17Q8NGF7 314 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 FGF13Q92913 245 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 NXPE3Q969Y0 559 aa22.53■■□□□ 1.2
VPS28-203ENST00000524521 ZNF512Q96ME7 567 aaPredicted RBP22.53■■□□□ 1.2
VPS28-203ENST00000524521 MRPS23Q9Y3D9 190 aaKnown RBP22.53■■□□□ 1.2
VPS28-203ENST00000524521 GOLGA6L4A6NEF3 574 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 VNN2O95498 520 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 IQCEQ6IPM2 695 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 SLC44A3Q8N4M1 653 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 LRRC52Q8N7C0 313 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 ATAD1Q8NBU5 361 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 KIAA0895Q8NCT3 520 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 OR10T2Q8NGX3 314 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 CXorf38Q8TB03 319 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 ING5Q8WYH8 240 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 CCDC47Q96A33 483 aaKnown RBP22.52■■□□□ 1.2
VPS28-203ENST00000524521 SIX4Q9UIU6 781 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 SLC27A5Q9Y2P5 690 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 PTPRJQ12913 1337 aa22.52■■□□□ 1.2
VPS28-203ENST00000524521 HUS1O60921 280 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 DLATP10515 647 aaKnown RBP22.51■■□□□ 1.19
VPS28-203ENST00000524521 TNNI1P19237 187 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 CDR1P51861 262 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 SLC39A12Q504Y0 691 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 CENPPQ6IPU0 288 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 SUGP1Q8IWZ8 645 aaKnown RBP22.51■■□□□ 1.19
VPS28-203ENST00000524521 C12orf56Q8IXR9 622 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 FBXL6Q8N531 539 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 GOLGA5Q8TBA6 731 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 CCDC127Q96BQ5 260 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 FNBP1Q96RU3 617 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 RTP3Q9BQQ7 232 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 CRISPLD1Q9H336 500 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 CEP72Q9P209 647 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms