RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 UBE2TQ9NPD8 197 aaPredicted RBP17.44■□□□□ 0.38
LSM1-204ENST00000522515 L1RE1Q9UN81 338 aa17.44■□□□□ 0.38
LSM1-204ENST00000522515 RWDD3Q9Y3V2 267 aa17.44■□□□□ 0.38
LSM1-204ENST00000522515 TIMM13Q9Y5L4 95 aaPredicted RBP17.44■□□□□ 0.38
LSM1-204ENST00000522515 FHOD1Q9Y613 1164 aa17.44■□□□□ 0.38
LSM1-204ENST00000522515 SF3B1O75533 1304 aaKnown RBP eCLIP17.43■□□□□ 0.388e-6■■■■■ 107
LSM1-204ENST00000522515 HUS1O60921 280 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 WEE2P0C1S8 567 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 P4HA1P13674 534 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 UCHL3P15374 230 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 RAP1GAPP47736 663 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 GCNT1Q02742 428 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 LRIT3Q3SXY7 679 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 FAM171A1Q5VUB5 890 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 PPP2R2DQ66LE6 453 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 IQCEQ6IPM2 695 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 LIMS2Q7Z4I7 341 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 APPL2Q8NEU8 664 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 B3GALT6Q96L58 329 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 PLVAPQ9BX97 442 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 SLC28A3Q9HAS3 691 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 DNAJC12Q9UKB3 198 aa17.43■□□□□ 0.38
LSM1-204ENST00000522515 C5orf67F2Z3F1 127 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 ODC1P11926 461 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 TRIM21P19474 475 aaKnown RBP17.42■□□□□ 0.38
LSM1-204ENST00000522515 TKTP29401 623 aaKnown RBP17.42■□□□□ 0.38
LSM1-204ENST00000522515 POLR2FP61218 127 aaKnown RBP17.42■□□□□ 0.38
LSM1-204ENST00000522515 ERVK-21P61565 698 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 PLCB3Q01970 1234 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 ELAVL2Q12926 359 aaKnown RBP17.42■□□□□ 0.38
LSM1-204ENST00000522515 WSCD1Q658N2 575 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 SPECC1LQ69YQ0 1117 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 DPH6Q7L8W6 267 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 RNF168Q8IYW5 571 aaPredicted RBP17.42■□□□□ 0.38
LSM1-204ENST00000522515 PDCL2Q8N4E4 241 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 TOP6BLQ8N6T0 577 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 FAXDC2Q96IV6 333 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 SAMD11Q96NU1 681 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 MRPL45Q9BRJ2 306 aaKnown RBP17.42■□□□□ 0.38
LSM1-204ENST00000522515 NAA15Q9BXJ9 866 aaKnown RBP17.42■□□□□ 0.38
LSM1-204ENST00000522515 CERS4Q9HA82 394 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 PCDHB8Q9UN66 801 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 CHD9Q3L8U1 2897 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 ITIH6Q6UXX5 1313 aa17.42■□□□□ 0.38
LSM1-204ENST00000522515 FGFR3P22607 806 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 TBXAS1P24557 533 aaPredicted RBP17.41■□□□□ 0.38
LSM1-204ENST00000522515 KRT17Q04695 432 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 ARHGAP44Q17R89 818 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 DDX53Q86TM3 631 aaKnown RBP17.41■□□□□ 0.38
LSM1-204ENST00000522515 CEP57Q86XR8 500 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 KBTBD7Q8WVZ9 684 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 TIFAQ96CG3 184 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 TTYH3Q9C0H2 523 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 CYP3A43Q9HB55 503 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 ALG13Q9NP73 1137 aaKnown RBP17.41■□□□□ 0.38
LSM1-204ENST00000522515 NLRC4Q9NPP4 1024 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 PLXNA4Q9HCM2 1894 aa17.41■□□□□ 0.38
LSM1-204ENST00000522515 SYN3O14994 580 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 TACC1O75410 805 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 SOD2P04179 222 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 CYP11A1P05108 521 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 RB1P06400 928 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 CD58P19256 250 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 MFAP3P55082 362 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 RTP2Q5QGT7 225 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.4■□□□□ 0.38
LSM1-204ENST00000522515 TMC6Q7Z403 805 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 ADGRF2Q8IZF7 708 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 UBR7Q8N806 425 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 CISHQ9NSE2 258 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 FBXL5Q9UKA1 691 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 VWA8A3KMH1 1905 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 TSC2P49815 1807 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 RNF225M0QZC1 329 aaPredicted RBP17.4■□□□□ 0.38
LSM1-204ENST00000522515 TYMPP19971 482 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 ACO1P21399 889 aaKnown RBP17.4■□□□□ 0.38
LSM1-204ENST00000522515 RFX1P22670 979 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 RAPGEF1Q13905 1077 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 USP41Q3LFD5 358 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 FIGNQ5HY92 759 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 ENOSF1Q7L5Y1 443 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 OSTM1Q86WC4 334 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 VPS52Q8N1B4 723 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 TMEM86AQ8N2M4 240 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 SPPL3Q8TCT6 385 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 FAM81BQ96LP2 452 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 TTPALQ9BTX7 342 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 C11orf84Q9BUA3 381 aaPredicted RBP17.4■□□□□ 0.38
LSM1-204ENST00000522515 NUP58Q9BVL2 599 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 CHST7Q9NS84 486 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 CEP72Q9P209 647 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 DSEQ9UL01 958 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 NME7Q9Y5B8 376 aa17.4■□□□□ 0.38
LSM1-204ENST00000522515 ARHGEF37A1IGU5 675 aa17.39■□□□□ 0.37
LSM1-204ENST00000522515 GABRDO14764 452 aa17.39■□□□□ 0.37
LSM1-204ENST00000522515 HCRTO43612 131 aa17.39■□□□□ 0.37
LSM1-204ENST00000522515 GYPCP04921 128 aa17.39■□□□□ 0.37
LSM1-204ENST00000522515 WARSP23381 471 aaKnown RBP17.39■□□□□ 0.37
LSM1-204ENST00000522515 DRAP1Q14919 205 aaPredicted RBP17.39■□□□□ 0.37
LSM1-204ENST00000522515 VARS2Q5ST30 1063 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms