RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 OCEL1Q9H607 264 aa13.99□□□□□ -0.17
CPNE3-205ENST00000522240 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.99□□□□□ -0.17
CPNE3-205ENST00000522240 TBC1D13Q9NVG8 400 aa13.99□□□□□ -0.17
CPNE3-205ENST00000522240 GDAP2Q9NXN4 497 aa13.99□□□□□ -0.17
CPNE3-205ENST00000522240 CNTN6Q9UQ52 1028 aa13.99□□□□□ -0.17
CPNE3-205ENST00000522240 BZW2Q9Y6E2 419 aaKnown RBP13.99□□□□□ -0.17
CPNE3-205ENST00000522240 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.99□□□□□ -0.17
CPNE3-205ENST00000522240 SCN1AP35498 2009 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 TMEM189-UBE2V1I3L0A0 370 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 WDR5P61964 334 aaKnown RBP13.98□□□□□ -0.17
CPNE3-205ENST00000522240 INCA1Q0VD86 236 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 UPP1Q16831 310 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 HGSNATQ68CP4 663 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 SCARA5Q6ZMJ2 495 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.98□□□□□ -0.17
CPNE3-205ENST00000522240 LRRC43Q8N309 656 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 BADQ92934 168 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 NXF1Q9UBU9 619 aaKnown RBP13.98□□□□□ -0.17
CPNE3-205ENST00000522240 POLIQ9UNA4 740 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 TSC2P49815 1807 aa13.98□□□□□ -0.17
CPNE3-205ENST00000522240 CASTOR2A6NHX0 329 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 KPNA7A9QM74 516 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 FOXN3O00409 490 aaPredicted RBP13.97□□□□□ -0.17
CPNE3-205ENST00000522240 ZMYND10O75800 440 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 GFPT2O94808 682 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 FAM163BP0C2L3 166 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 PNMA6AP0CW24 399 aaPredicted RBP13.97□□□□□ -0.17
CPNE3-205ENST00000522240 SKILP12757 684 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 BMP8BP34820 402 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 AARSP49588 968 aaKnown RBP eCLIP13.97□□□□□ -0.17
CPNE3-205ENST00000522240 CLCNKBP51801 687 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 ZNF132P52740 706 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 KLHL30Q0D2K2 578 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 TDRD12Q587J7 1177 aaKnown RBP13.97□□□□□ -0.17
CPNE3-205ENST00000522240 IER5LQ5T953 404 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 GPR153Q6NV75 609 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 DPH6Q7L8W6 267 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 LIMS2Q7Z4I7 341 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 IRF2BP2Q7Z5L9 587 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 COLGALT2Q8IYK4 626 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 CCDC170Q8IYT3 715 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 TOP1MTQ969P6 601 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 ELMO3Q96BJ8 720 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 SMYD3Q9H7B4 428 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 RC3H2Q9HBD1 1191 aaKnown RBP13.97□□□□□ -0.17
CPNE3-205ENST00000522240 CISHQ9NSE2 258 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 ARHGAP20Q9P2F6 1191 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 ZKSCAN5Q9Y2L8 839 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 PTPRSQ13332 1948 aa13.97□□□□□ -0.17
CPNE3-205ENST00000522240 ARHGEF37A1IGU5 675 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 CARNS1A5YM72 827 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 DPYSL4O14531 572 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 ATMINO43313 823 aaPredicted RBP13.96□□□□□ -0.17
CPNE3-205ENST00000522240 TACC1O75410 805 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 DGKIO75912 1065 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 FGBP02675 491 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 ACRP10323 421 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 KRT5P13647 590 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 CYLC1P35663 651 aaPredicted RBP13.96□□□□□ -0.17
CPNE3-205ENST00000522240 PDE6CP51160 858 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 BPIFB4P59827 614 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 LILRA4P59901 499 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 DEFB103AP81534 67 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 RNASELQ05823 741 aaKnown RBP13.96□□□□□ -0.17
CPNE3-205ENST00000522240 TOP6BLQ8N6T0 577 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 RBBP8NLQ8NC74 664 aaPredicted RBP13.96□□□□□ -0.17
CPNE3-205ENST00000522240 SPATA18Q8TC71 538 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 EPS8L1Q8TE68 723 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 ZNF830Q96NB3 372 aaPredicted RBP13.96□□□□□ -0.17
CPNE3-205ENST00000522240 FAM193BQ96PV7 902 aaPredicted RBP13.96□□□□□ -0.17
CPNE3-205ENST00000522240 CHP1Q99653 195 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 TMEM175Q9BSA9 504 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 SDCBP2Q9H190 292 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 PCDHB4Q9Y5E5 795 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 SNX9Q9Y5X1 595 aa13.96□□□□□ -0.17
CPNE3-205ENST00000522240 SOWAHDA6NJG2 315 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 TBKBP1A7MCY6 615 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 SPTLC1O15269 473 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 CILPO75339 1184 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 DDHD2O94830 711 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 MLLT3P42568 568 aaPredicted RBP13.95□□□□□ -0.18
CPNE3-205ENST00000522240 FOXK1P85037 733 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 ARID5AQ03989 594 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 TMEM240Q5SV17 173 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 DCLRE1AQ6PJP8 1040 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 TMEM270Q6UE05 265 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 VPS36Q86VN1 386 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 ZNF677Q86XU0 584 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 CMTR2Q8IYT2 770 aaKnown RBP13.95□□□□□ -0.18
CPNE3-205ENST00000522240 C3orf58Q8NDZ4 430 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 ZNF689Q96CS4 500 aaPredicted RBP13.95□□□□□ -0.18
CPNE3-205ENST00000522240 MMS19Q96T76 1030 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 SYT11Q9BT88 431 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 MTIF3Q9H2K0 278 aaKnown RBP13.95□□□□□ -0.18
CPNE3-205ENST00000522240 HAUS4Q9H6D7 363 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 NRDE2Q9H7Z3 1164 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 NHEJ1Q9H9Q4 299 aaPredicted RBP13.95□□□□□ -0.18
CPNE3-205ENST00000522240 BARX2Q9UMQ3 279 aaPredicted RBP13.95□□□□□ -0.18
CPNE3-205ENST00000522240 BOLA1Q9Y3E2 137 aa13.95□□□□□ -0.18
CPNE3-205ENST00000522240 CYP26A1O43174 497 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms