RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 FAM47DPA6NHR8 397 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 ITGB3P05106 788 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 PPP3CAQ08209 521 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 AGBL2Q5U5Z8 902 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 TIPINQ9BVW5 301 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 NIF3L1Q9GZT8 377 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 DDX56Q9NY93 547 aaKnown RBP12.31□□□□□ -0.44
SYNPO-204ENST00000519664 PNMA3Q9UL41 463 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 APOBEC2Q9Y235 224 aaKnown RBP12.31□□□□□ -0.44
SYNPO-204ENST00000519664 MAP2K7O14733 419 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 NOL3O60936 208 aaKnown RBP12.3□□□□□ -0.44
SYNPO-204ENST00000519664 CTSHP09668 335 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 RANBP1P43487 201 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 ARL13BQ3SXY8 428 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 SWT1Q5T5J6 900 aaKnown RBP12.3□□□□□ -0.44
SYNPO-204ENST00000519664 FBXO41Q8TF61 875 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 BAP1Q92560 729 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 ATP6V1E2Q96A05 226 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 CDC42EP4Q9H3Q1 356 aaKnown RBP12.3□□□□□ -0.44
SYNPO-204ENST00000519664 METTL5Q9NRN9 209 aaKnown RBP12.3□□□□□ -0.44
SYNPO-204ENST00000519664 ZC3H7BQ9UGR2 993 aaKnown RBP12.3□□□□□ -0.44
SYNPO-204ENST00000519664 SPATA31A6Q5VVP1 1343 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 PEAK1Q9H792 1746 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 P4HA2O15460 535 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 SRGAP2BP0DMP2 458 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 CPA2P48052 419 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 RAD23BP54727 409 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 MXD4Q14582 209 aaPredicted RBP12.3□□□□□ -0.44
SYNPO-204ENST00000519664 HABP4Q5JVS0 413 aaKnown RBP12.3□□□□□ -0.44
SYNPO-204ENST00000519664 GMCL1P1Q8NEA9 526 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 MYL6P60660 151 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 IFI35P80217 286 aaPredicted RBP12.3□□□□□ -0.44
SYNPO-204ENST00000519664 ART3Q13508 389 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 LRRC36Q1X8D7 754 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 C1orf146Q5VVC0 180 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 DAB2IPQ5VWQ8 1189 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 NAIF1Q69YI7 327 aaPredicted RBP12.3□□□□□ -0.44
SYNPO-204ENST00000519664 KDM7AQ6ZMT4 941 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 NT5DC3Q86UY8 548 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 DNAJC5Q9H3Z4 198 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 SCOCQ9UIL1 159 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 C19orf81C9J6K1 198 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 WNT10BO00744 389 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 ZNF263O14978 683 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 PBX1P40424 430 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 MAP3K21Q5TCX8 1036 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 SLC30A9Q6PML9 568 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 PGBD4Q96DM1 585 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 RMDN2Q96LZ7 410 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 TMBIM4Q9HC24 238 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 CD248Q9HCU0 757 aa12.3□□□□□ -0.44
SYNPO-204ENST00000519664 CCT8L1PA6NM43 557 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 ENO4A6NNW6 628 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 PPP1R11O60927 126 aaPredicted RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 SKIP12755 728 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 DYNC1I2Q13409 638 aaKnown RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 TMEM132DQ14C87 1099 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 LVRNQ6Q4G3 990 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 PDCD6IPQ8WUM4 868 aaKnown RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 RNF19AQ9NV58 838 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 GPATCH2LQ9NWQ4 482 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 BFARQ9NZS9 450 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 KLK14Q9P0G3 267 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 ZFATQ9P243 1243 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 KNDC1Q76NI1 1749 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 SPECC1L-ADORA2AF8WAN1 911 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 RAP1GAPP47736 663 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 BACE1P56817 501 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 OCRLQ01968 901 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 FOXD4Q12950 439 aaPredicted RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 PIGHQ14442 188 aaPredicted RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 BZW1Q7L1Q6 419 aaKnown RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 USP33Q8TEY7 942 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 SHCBP1LQ9BZQ2 653 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 AGO4Q9HCK5 861 aaKnown RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 KCND1Q9NSA2 647 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 CPSF3Q9UKF6 684 aaKnown RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 ANKRD63C9JTQ0 380 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 APOL1O14791 398 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 KRT4P19013 534 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 ALDH18A1P54886 795 aaKnown RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 COG7P83436 770 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 NPY5RQ15761 445 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 EP400NLQ6ZTU2 488 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 LRRC43Q8N309 656 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 AENQ8WTP8 325 aaKnown RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 GCOM2Q9BZD3 368 aaPredicted RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 BCAP29Q9UHQ4 241 aa12.29□□□□□ -0.44
SYNPO-204ENST00000519664 TSR3Q9UJK0 312 aaKnown RBP12.29□□□□□ -0.44
SYNPO-204ENST00000519664 MAFGO15525 162 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 ENO1P06733 434 aaKnown RBP12.28□□□□□ -0.44
SYNPO-204ENST00000519664 GCLCP48506 637 aaPredicted RBP12.28□□□□□ -0.44
SYNPO-204ENST00000519664 MARCKSL1P49006 195 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 CNTN2Q02246 1040 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 MROH9Q5TGP6 573 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 NOP9Q86U38 636 aaKnown RBP12.28□□□□□ -0.44
SYNPO-204ENST00000519664 OR6P1Q8NGX9 317 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 TRAPPC12Q8WVT3 735 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 WDR18Q9BV38 432 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms