RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 CDH22Q9UJ99 828 aa21.75■■□□□ 1.07
USP53-208ENST00000514305 IKBKBO14920 756 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 DLATP10515 647 aaKnown RBP21.74■■□□□ 1.07
USP53-208ENST00000514305 OR1G1P47890 313 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 CASP4P49662 377 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 BFSP1Q12934 665 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 KIAA1841Q6NSI8 718 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 PARD3BQ8TEW8 1205 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 SLC22A17Q8WUG5 538 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 CCDC127Q96BQ5 260 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 PPP1R10Q96QC0 940 aaKnown RBP21.74■■□□□ 1.07
USP53-208ENST00000514305 CGRRF1Q99675 332 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 FUCA2Q9BTY2 467 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 COLEC11Q9BWP8 271 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 VN1R3Q9BXE9 311 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 TSPY26PQ9H489 355 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 PDE11AQ9HCR9 933 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 SSX2IPQ9Y2D8 614 aa21.74■■□□□ 1.07
USP53-208ENST00000514305 PRG3Q9Y2Y8 225 aaPredicted RBP21.74■■□□□ 1.07
USP53-208ENST00000514305 PTGESO14684 152 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 SOD2P04179 222 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 URODP06132 367 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 TFAMQ00059 246 aaKnown RBP21.73■■□□□ 1.07
USP53-208ENST00000514305 SPAG1Q07617 926 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 JADE1Q6IE81 842 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 CREBRFQ8IUR6 639 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 C12orf76Q8N812 135 aaPredicted RBP21.73■■□□□ 1.07
USP53-208ENST00000514305 TDRD5Q8NAT2 981 aaKnown RBP21.73■■□□□ 1.07
USP53-208ENST00000514305 GSTCDQ8NEC7 633 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 SFXN1Q9H9B4 322 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 MIOSQ9NXC5 875 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 NFE2L3Q9Y4A8 694 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 DENND4AQ7Z401 1863 aa21.73■■□□□ 1.07
USP53-208ENST00000514305 MYO10Q9HD67 2058 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 C2CD4DB7Z1M9 353 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 WEE2P0C1S8 567 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 GTF2H1P32780 548 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 CETN1Q12798 172 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 GLRA4Q5JXX5 417 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 TCERG1LQ5VWI1 586 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 C11orf57Q6ZUT1 292 aaPredicted RBP21.72■■□□□ 1.07
USP53-208ENST00000514305 COLGALT2Q8IYK4 626 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 FBXL6Q8N531 539 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 ZSWIM2Q8NEG5 633 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 KLHL5Q96PQ7 755 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 INTS13Q9NVM9 706 aa21.72■■□□□ 1.07
USP53-208ENST00000514305 KMT2EQ8IZD2 1858 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 GOLGA6L19H0YKK7 550 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 C2CD2LO14523 706 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 PHACTR2O75167 634 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 CNPP09543 421 aaKnown RBP21.71■■□□□ 1.07
USP53-208ENST00000514305 CDK11BP21127 795 aaKnown RBP21.71■■□□□ 1.07
USP53-208ENST00000514305 MARSP56192 900 aaKnown RBP21.71■■□□□ 1.07
USP53-208ENST00000514305 ZNF445P59923 1031 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 NHLH1Q02575 133 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 DSC1Q08554 894 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 MTMR3Q13615 1198 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 ZBTB6Q15916 424 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 ELMSAN1Q6PJG2 1045 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 TMC5Q6UXY8 1006 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 EEF2KMTQ96G04 330 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 ZMAT2Q96NC0 199 aaKnown RBP21.71■■□□□ 1.07
USP53-208ENST00000514305 PRRX2Q99811 253 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 HERC2P3Q9BVR0 1158 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 DPP3Q9NY33 737 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 ITGA11Q9UKX5 1188 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 SORCS3Q9UPU3 1222 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 WDFY4Q6ZS81 3184 aa21.71■■□□□ 1.07
USP53-208ENST00000514305 C2orf16Q68DN1 1984 aa21.7■■□□□ 1.07
USP53-208ENST00000514305 ARHGEF37A1IGU5 675 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 TRAPPC3O43617 180 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 N4BP1O75113 896 aaKnown RBP21.7■■□□□ 1.06
USP53-208ENST00000514305 ADH1AP07327 375 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 EEF1GP26641 437 aaKnown RBP21.7■■□□□ 1.06
USP53-208ENST00000514305 LRPAP1P30533 357 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 PNPLA4P41247 253 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 MTIF2P46199 727 aaKnown RBP21.7■■□□□ 1.06
USP53-208ENST00000514305 CLCN4P51793 760 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 TRPC3Q13507 836 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 DCLRE1AQ6PJP8 1040 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 UBALD2Q8IYN6 164 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 KREMEN2Q8NCW0 462 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 MARCH5Q9NX47 278 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 DPP7Q9UHL4 492 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 USTQ9Y2C2 406 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.7■■□□□ 1.06
USP53-208ENST00000514305 PLXNA3P51805 1871 aa21.7■■□□□ 1.06
USP53-208ENST00000514305 CITO14578 2027 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 NFICP08651 508 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 GLUD2P49448 558 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 CLDN10P78369 228 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 RBP5P82980 135 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 ELAVL2Q12926 359 aaKnown RBP21.69■■□□□ 1.06
USP53-208ENST00000514305 DCAF17Q5H9S7 520 aaPredicted RBP21.69■■□□□ 1.06
USP53-208ENST00000514305 ALYREFQ86V81 257 aaKnown RBP21.69■■□□□ 1.06
USP53-208ENST00000514305 AOPEPQ8N6M6 819 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 CCDC150Q8NCX0 1101 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 FAM200AQ8TCP9 573 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 ASIC4Q96FT7 647 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 CNOT6LQ96LI5 555 aaKnown RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms