RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 CACNB2Q08289 660 aaPredicted RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 INCA1Q0VD86 236 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 GNASQ5JWF2 1037 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 UBXN11Q5T124 520 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 SCARA3Q6AZY7 606 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 PLEKHA7Q6IQ23 1121 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 CC2D1AQ6P1N0 951 aaPredicted RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 RSPH3Q86UC2 560 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 SERINC5Q86VE9 423 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 LRRC52Q8N7C0 313 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 UBL4BQ8N7F7 174 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 EIF1ADQ8N9N8 165 aaKnown RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 TMEM35BQ8NCS4 154 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 ZNF564Q8TBZ8 553 aaPredicted RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 PXYLP1Q8TE99 480 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 CYFIP2Q96F07 1278 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 PNKPQ96T60 521 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 NAP1L3Q99457 506 aaPredicted RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 OSMRQ99650 979 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.92□□□□□ -0.982e-6■□□□□ 11.1
RNF4-220ENST00000513578 NUP85Q9BW27 656 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 ARFGAP3Q9NP61 516 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 CHST12Q9NRB3 414 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 SRRDQ9UH36 339 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 UBQLN1Q9UMX0 589 aaKnown RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 TRPV2Q9Y5S1 764 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 SCINQ9Y6U3 715 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 TCRBV5S1A1TA0A578 114 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 CCDC66A2RUB6 948 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 BHMG1C9JSJ3 638 aaPredicted RBP8.91□□□□□ -0.98
RNF4-220ENST00000513578 PGRMC1O00264 195 aaKnown RBP8.91□□□□□ -0.98
RNF4-220ENST00000513578 CILPO75339 1184 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 CLSTN1O94985 981 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 CD4P01730 458 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 CALB1P05937 261 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 MAN1A1P33908 653 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 CTNNA1P35221 906 aaKnown RBP8.91□□□□□ -0.98
RNF4-220ENST00000513578 RAD23BP54727 409 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 PRMT2P55345 433 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 TNNC1P63316 161 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 TAP1Q03518 808 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 C2orf54Q08AI8 447 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 MGAT3Q09327 533 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 MYO1EQ12965 1108 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 STILQ15468 1287 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 NBPF20Q3BBV1 942 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 WDR72Q3MJ13 1102 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 NAA35Q5VZE5 725 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 FAM43BQ6ZT52 329 aaPredicted RBP8.91□□□□□ -0.98
RNF4-220ENST00000513578 PCSK9Q8NBP7 692 aaKnown RBP8.91□□□□□ -0.98
RNF4-220ENST00000513578 BEST2Q8NFU1 509 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 WHAMMQ8TF30 809 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 TMEM40Q8WWA1 233 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.91□□□□□ -0.98
RNF4-220ENST00000513578 ELMO3Q96BJ8 720 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 HPDLQ96IR7 371 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 MS4A14Q96JA4 679 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 PPP1R16BQ96T49 567 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 ZSWIM1Q9BR11 485 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 TRAIPQ9BWF2 469 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 EPC1Q9H2F5 836 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 SLITRK6Q9H5Y7 841 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 ZNF446Q9NWS9 450 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 SNTG2Q9NY99 539 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 ADAM22Q9P0K1 906 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 PACSIN2Q9UNF0 486 aaPredicted RBP8.91□□□□□ -0.98
RNF4-220ENST00000513578 AGAP1Q9UPQ3 857 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 PCDHA3Q9Y5H8 950 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 SQORQ9Y6N5 450 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 CUL9Q8IWT3 2517 aa8.91□□□□□ -0.98
RNF4-220ENST00000513578 A0A0U1RQG5 324 aaPredicted RBP8.9□□□□□ -0.98
RNF4-220ENST00000513578 M0QZ92 97 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 TULP1O00294 542 aaPredicted RBP8.9□□□□□ -0.98
RNF4-220ENST00000513578 PIRO00625 290 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 CEP104O60308 925 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 AOC2O75106 756 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 CAND2O75155 1236 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 PROSCO94903 275 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 HMGCRP04035 888 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 KRT19P08727 400 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 WEE2P0C1S8 567 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 RHOXF2BP0C7M4 288 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 VDRP11473 427 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 ATF7P17544 494 aaPredicted RBP8.9□□□□□ -0.98
RNF4-220ENST00000513578 COMTP21964 271 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 FGFR4P22455 802 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 RRM1P23921 792 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 POLR2BP30876 1174 aaKnown RBP8.9□□□□□ -0.98
RNF4-220ENST00000513578 PNPLA4P41247 253 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 VSNL1P62760 191 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 ZNF200P98182 395 aaPredicted RBP8.9□□□□□ -0.98
RNF4-220ENST00000513578 TMEM62Q0P6H9 643 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 CNGA2Q16280 664 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 MAP9Q49MG5 647 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 FAM26DQ5JW98 314 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 BEND6Q5SZJ8 279 aaPredicted RBP8.9□□□□□ -0.98
RNF4-220ENST00000513578 CCNI2Q6ZMN8 369 aaPredicted RBP8.9□□□□□ -0.98
RNF4-220ENST00000513578 PAXIP1Q6ZW49 1069 aaPredicted RBP8.9□□□□□ -0.98
RNF4-220ENST00000513578 LIMS2Q7Z4I7 341 aa8.9□□□□□ -0.98
RNF4-220ENST00000513578 FAM228AQ86W67 206 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms