RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 HEY2Q9UBP5 337 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 RFX7Q2KHR2 1363 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 HOXB6P17509 224 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 PAX7P23759 505 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 TUBA1BP68363 451 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 DLG4P78352 724 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 HPCAP84074 193 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 STK4Q13043 487 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 ZNF211Q13398 564 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 PIGHQ14442 188 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 ANO4Q32M45 955 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 RWDD4Q6NW29 188 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 MZT2AQ6P582 158 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 TUBA1AQ71U36 451 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 C16orf62Q7Z3J2 963 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 NOP9Q86U38 636 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 DGKHQ86XP1 1220 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 STX12Q86Y82 276 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 ABI1Q8IZP0 508 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 KCTD17Q8N5Z5 321 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 RDM1Q8NG50 284 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 C11orf70Q9BRQ4 267 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 HDHD2Q9H0R4 259 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 PCIF1Q9H4Z3 704 aa11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 COL17A1Q9UMD9 1497 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-217ENST00000512946 RIMBP2O15034 1052 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 POLBP06746 335 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 JAK1P23458 1154 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 PSMD4P55036 377 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 USP10Q14694 798 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 LLGL1Q15334 1064 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 C12orf60Q5U649 245 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 USP38Q8NB14 1042 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 SHCBP1Q8NEM2 672 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 ZNF184Q99676 751 aaPredicted RBP11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 TIPINQ9BVW5 301 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 KANSL2Q9H9L4 492 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 EIF3LQ9Y262 564 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 SYCP2Q9BX26 1530 aa11.71□□□□□ -0.54
LIMCH1-217ENST00000512946 C15orf38-AP3S2A0A0A6YYH1 394 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 RAD51BO15315 384 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 NCK2O43639 380 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 CCNA2P20248 432 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 NPEPPSP55786 919 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 XIAPP98170 497 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 TCIRG1Q13488 830 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 SF3B3Q15393 1217 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 DLGAP5Q15398 846 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 DDB1Q16531 1140 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 KRT24Q2M2I5 525 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 NYAP1Q6ZVC0 841 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 ARPINQ7Z6K5 226 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 DPP10Q8N608 796 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 WNK4Q96J92 1243 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 GCNAQ96QF7 691 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 AGPAT1Q99943 283 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 TMEM79Q9BSE2 394 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 INTS2Q9H0H0 1204 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 TMBIM4Q9HC24 238 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 ING3Q9NXR8 418 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 MRPL39Q9NYK5 338 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 SORCS3Q9UPU3 1222 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 ADCY6O43306 1168 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 SKAP2O75563 359 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 NPR3P17342 541 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 RAP1GAPP47736 663 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 LONRF1Q17RB8 773 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 PMF1Q6P1K2 205 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 BARGINQ6ZT62 677 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 ARID3BQ8IVW6 561 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 DHX40Q8IX18 779 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 MOSPD2Q8NHP6 518 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 MYLK2Q9H1R3 596 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 SLC24A2Q9UI40 661 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 L1RE1Q9UN81 338 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 MAGED2Q9UNF1 606 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 PCDHB6Q9Y5E3 794 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 SNX13Q9Y5W8 968 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 RAD54BQ9Y620 910 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 CDHR2Q9BYE9 1310 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 UBE2QL1A1L167 161 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 CD58P19256 250 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 PRCPP42785 496 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 RPL5P46777 297 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 KIAA0408Q6ZU52 694 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 MIGA2Q7L4E1 593 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 FAM160B2Q86V87 743 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 CLVS1Q8IUQ0 354 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 THEM5Q8N1Q8 247 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 PIK3C3Q8NEB9 887 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 RASSF5Q8WWW0 418 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 SKA1Q96BD8 255 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 EFHD2Q96C19 240 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 TASP1Q9H6P5 420 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 MOV10Q9HCE1 1003 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 ARHGEF38Q9NXL2 777 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 CYP39A1Q9NYL5 469 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 GGT7Q9UJ14 662 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 SRGNP10124 158 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 CCDC130P13994 396 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms