RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PPM1KQ8N3J5 372 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 DENND1AQ8TEH3 1009 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 MAML1Q92585 1016 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 VTA1Q9NP79 307 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 CYLDQ9NQC7 956 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 PCYOX1Q9UHG3 505 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 MTUS1Q9ULD2 1270 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 A0A1B0GTW7 788 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 A0A1W2PPM1 405 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 GOLGA8RI6L899 631 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 TBC1D12O60347 775 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 TECP42680 631 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 MCAMP43121 646 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 FOXO4P98177 505 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 CDK16Q00536 496 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 LRRC63Q05C16 580 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 PDK1Q15118 436 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 CNGA3Q16281 694 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 SEL1L2Q5TEA6 688 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 TMCO4Q5TGY1 634 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 GJB7Q6PEY0 223 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 SV2BQ7L1I2 683 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 TRABD2AQ86V40 505 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 C11orf74Q86VG3 221 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 CCSER1Q9C0I3 900 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 PIH1D3Q9NQM4 214 aaKnown RBP12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 INPP5FQ9Y2H2 1132 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 AMOTL2Q9Y2J4 779 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 MED1Q15648 1581 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 ZMYM2Q9UBW7 1377 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 TIMM44O43615 452 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 UCHL3P15374 230 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 PON1P27169 355 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 GSSP48637 474 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 NR1H2P55055 460 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 ARL4CP56559 192 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 KCNJ8Q15842 424 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 CATIPQ7Z7H3 387 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 CPNE9Q8IYJ1 553 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 EFCAB3Q8N7B9 438 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 ANKK1Q8NFD2 765 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 HELQQ8TDG4 1101 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 GPKOWQ92917 476 aaPredicted RBP eCLIP12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 THAP11Q96EK4 314 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 GANQ9H2C0 597 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 AASDHPPTQ9NRN7 309 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 ALG6Q9Y672 507 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 RGPD1P0DJD0 1748 aa12.67□□□□□ -0.38
LIMCH1-213ENST00000511496 MYMKA6NI61 221 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 SORBS2O94875 1100 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 CAMTA2O94983 1202 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 TNFAIP8O95379 198 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 CSF1RP07333 972 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 CPA3P15088 417 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 ADCY8P40145 1251 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 KCNH2Q12809 1159 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 OASLQ15646 514 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 CYP2A13Q16696 494 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 CYFIP1Q7L576 1253 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 GUF1Q8N442 669 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 SKA1Q96BD8 255 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 ARHGEF26Q96DR7 871 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 KLF6Q99612 283 aaPredicted RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 PALMDQ9NP74 551 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 GID8Q9NWU2 228 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 ANAPC5Q9UJX4 755 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 DIS3Q9Y2L1 958 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 FAM205AQ6ZU69 1335 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 TSPOAP1O95153 1857 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 SMIM22K7EJ46 135 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 GNPATO15228 680 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 PIM1P11309 404 aaPredicted RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 RAG1P15918 1043 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 PDE6AP16499 860 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 NELFEP18615 380 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 GNA11P29992 359 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 E2F2Q14209 437 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 XKR5Q6UX68 686 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 ANKMY2Q8IV38 441 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 ITPKCQ96DU7 683 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 PLEKHA8Q96JA3 519 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 ZNF287Q9HBT7 754 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 ZFYVE28Q9HCC9 887 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 KIAA1586Q9HCI6 787 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 SCHIP1Q9P0W5 487 aaPredicted RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 DNAJB4Q9UDY4 337 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 SPATA31D1Q6ZQQ2 1576 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 ALKQ9UM73 1620 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 ANKRD34BA5PLL1 514 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 J3QRK9 145 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 RNMTO43148 476 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 PIAS1O75925 651 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 DLATP10515 647 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 CCT8P50990 548 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 MYBPC1Q00872 1141 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 IFIT1BQ5T764 474 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 DDI1Q8WTU0 396 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 HPS1Q92902 700 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 FBXL8Q96CD0 374 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 OXNAD1Q96HP4 312 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms