RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 ZMAT2Q96NC0 199 aaKnown RBP8.72□□□□□ -1.01
SCN1A-207ENST00000507401 REEP2Q9BRK0 252 aa8.72□□□□□ -1.01
SCN1A-207ENST00000507401 ST6GALNAC4Q9H4F1 302 aa8.72□□□□□ -1.01
SCN1A-207ENST00000507401 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.72□□□□□ -1.01
SCN1A-207ENST00000507401 IGSF9Q9P2J2 1179 aa8.72□□□□□ -1.01
SCN1A-207ENST00000507401 MTRRQ9UBK8 725 aa8.72□□□□□ -1.01
SCN1A-207ENST00000507401 CDH22Q9UJ99 828 aa8.72□□□□□ -1.01
SCN1A-207ENST00000507401 TBX20Q9UMR3 447 aa8.72□□□□□ -1.01
SCN1A-207ENST00000507401 ZDHHC9Q9Y397 364 aa8.72□□□□□ -1.01
SCN1A-207ENST00000507401 CLIC4Q9Y696 253 aa8.72□□□□□ -1.01
SCN1A-207ENST00000507401 ZFP37Q9Y6Q3 630 aaPredicted RBP8.72□□□□□ -1.01
SCN1A-207ENST00000507401 PLXNA3P51805 1871 aa8.71□□□□□ -1.01
SCN1A-207ENST00000507401 NPHP3-ACAD11A0A0J9YXS1 232 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 SYN3O14994 580 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 CCP110O43303 1012 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 STX6O43752 255 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 NRDCO43847 1150 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 RFPL2O75678 378 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 FAM13AO94988 1023 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 PIGRP01833 764 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 KRT18P05783 430 aaKnown RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 ADRB2P07550 413 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 POU2F2P09086 479 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 CLTAP09496 248 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 SPATA31D3P0C874 917 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 RPL17P18621 184 aaKnown RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 CYP3A5P20815 502 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 PAX3P23760 479 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 HOXA9P31269 272 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 OR1D2P34982 312 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 TXLNAP40222 546 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 OSTNP61366 133 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 POU5F1Q01860 360 aaKnown RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 GRIN1Q05586 938 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 SOX4Q06945 474 aaPredicted RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 RESTQ13127 1097 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 MCM6Q14566 821 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 SLC39A14Q15043 492 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 KARSQ15046 597 aaKnown RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 ZBTB6Q15916 424 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 GLRA4Q5JXX5 417 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 PRSS55Q6UWB4 352 aaPredicted RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 SPATA31D4Q6ZUB0 917 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 ANKS3Q6ZW76 656 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 GPBP1Q86WP2 473 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 CEP57Q86XR8 500 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 SUGP1Q8IWZ8 645 aaKnown RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 CD302Q8IX05 232 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 FBXL6Q8N531 539 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 RASSF8Q8NHQ8 419 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 FAM200AQ8TCP9 573 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 LRRC15Q8TF66 581 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 SMG7Q92540 1137 aaKnown RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 ZNF775Q96BV0 537 aaPredicted RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 ZNF707Q96C28 371 aaPredicted RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 EPSTI1Q96J88 318 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 PIDD1Q9HB75 910 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 ARGLU1Q9NWB6 273 aaPredicted RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 EPS15L1Q9UBC2 864 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 CACNG4Q9UBN1 327 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 STK17AQ9UEE5 414 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 FBXO2Q9UK22 296 aaPredicted RBP8.71□□□□□ -1.02
SCN1A-207ENST00000507401 FBXW11Q9UKB1 542 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 MAFFQ9ULX9 164 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 MTMR6Q9Y217 621 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 CITO14578 2027 aa8.71□□□□□ -1.02
SCN1A-207ENST00000507401 DENND4AQ7Z401 1863 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 C2orf16Q68DN1 1984 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 A0A0B4J269 797 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 TTC26A0AVF1 554 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 PODXLO00592 558 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 MEFVO15553 781 aaPredicted RBP8.7□□□□□ -1.02
SCN1A-207ENST00000507401 TBCAO75347 108 aaKnown RBP8.7□□□□□ -1.02
SCN1A-207ENST00000507401 ABLIM3O94929 683 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 SP100P23497 879 aaPredicted RBP8.7□□□□□ -1.02
SCN1A-207ENST00000507401 LIG4P49917 911 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 TUBB4BP68371 445 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 TDGQ13569 410 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 MRPL58Q14197 206 aaKnown RBP8.7□□□□□ -1.02
SCN1A-207ENST00000507401 RRAGBQ5VZM2 374 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 SLFN12LQ6IEE8 588 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 SLC8B1Q6J4K2 584 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 CCDC73Q6ZRK6 1079 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 USP49Q70CQ1 688 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 SV2BQ7L1I2 683 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 ZNF720Q7Z2F6 126 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 RNF214Q8ND24 703 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 C3orf58Q8NDZ4 430 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 ZNF461Q8TAF7 563 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 HASPINQ8TF76 798 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 FIZ1Q96SL8 496 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 SRRTQ9BXP5 876 aaKnown RBP8.7□□□□□ -1.02
SCN1A-207ENST00000507401 OXCT2Q9BYC2 517 aaPredicted RBP8.7□□□□□ -1.02
SCN1A-207ENST00000507401 KCNK12Q9HB15 430 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 SEL1LQ9UBV2 794 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 NUB1Q9Y5A7 615 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 STYXL1Q9Y6J8 313 aa8.7□□□□□ -1.02
SCN1A-207ENST00000507401 ZNF318Q5VUA4 2279 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 H7C4K7 107 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 HNRNPDLO14979 420 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms