RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 ANKRD40Q6AI12 368 aa18.2■□□□□ 0.5
SYNE4-207ENST00000505054 SCARA3Q6AZY7 606 aa18.2■□□□□ 0.5
SYNE4-207ENST00000505054 OTOP3Q7RTS5 596 aa18.2■□□□□ 0.5
SYNE4-207ENST00000505054 GPR149Q86SP6 731 aa18.2■□□□□ 0.5
SYNE4-207ENST00000505054 C1orf127Q8N9H9 656 aa18.2■□□□□ 0.5
SYNE4-207ENST00000505054 OR5B17Q8NGF7 314 aa18.2■□□□□ 0.5
SYNE4-207ENST00000505054 CCDC127Q96BQ5 260 aa18.2■□□□□ 0.5
SYNE4-207ENST00000505054 DHTKD1Q96HY7 919 aaPredicted RBP18.2■□□□□ 0.5
SYNE4-207ENST00000505054 MTMR12Q9C0I1 747 aa18.2■□□□□ 0.5
SYNE4-207ENST00000505054 INTS13Q9NVM9 706 aa18.2■□□□□ 0.5
SYNE4-207ENST00000505054 PIRO00625 290 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 C2CD2LO14523 706 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 PSMA7O14818 248 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 AKAP3O75969 853 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 DLATP10515 647 aaKnown RBP18.19■□□□□ 0.5
SYNE4-207ENST00000505054 FGFR3P22607 806 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 CCNE1P24864 410 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 AARSP49588 968 aaKnown RBP eCLIP18.19■□□□□ 0.5
SYNE4-207ENST00000505054 STIM1Q13586 685 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 SURF1Q15526 300 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 CEP135Q66GS9 1140 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 KLHL10Q6JEL2 608 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.19■□□□□ 0.5
SYNE4-207ENST00000505054 C15orf39Q6ZRI6 1047 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 WDR49Q8IV35 697 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 ZC3H3Q8IXZ2 948 aaKnown RBP18.19■□□□□ 0.5
SYNE4-207ENST00000505054 CXorf38Q8TB03 319 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 CGRRF1Q99675 332 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 DUSP12Q9UNI6 340 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 NUB1Q9Y5A7 615 aa18.19■□□□□ 0.5
SYNE4-207ENST00000505054 PTPRZ1P23471 2315 aaPredicted RBP18.18■□□□□ 0.5
SYNE4-207ENST00000505054 SPTLC1O15269 473 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 TMEM191BP0C7N4 346 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 RPL13P26373 211 aaKnown RBP18.18■□□□□ 0.5
SYNE4-207ENST00000505054 TKTP29401 623 aaKnown RBP18.18■□□□□ 0.5
SYNE4-207ENST00000505054 PPP1R2P41236 205 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 FOXK2Q01167 660 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 LRRC63Q05C16 580 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 ADAM9Q13443 819 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 PRSS55Q6UWB4 352 aaPredicted RBP18.18■□□□□ 0.5
SYNE4-207ENST00000505054 FEZF2Q8TBJ5 459 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 CACTINQ8WUQ7 758 aaKnown RBP18.18■□□□□ 0.5
SYNE4-207ENST00000505054 RIN2Q8WYP3 895 aaPredicted RBP18.18■□□□□ 0.5
SYNE4-207ENST00000505054 EEF2KMTQ96G04 330 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 SUSD3Q96L08 255 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 KLHL5Q96PQ7 755 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 TSG101Q99816 390 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 TTPALQ9BTX7 342 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 MRPL17Q9NRX2 175 aaKnown RBP18.18■□□□□ 0.5
SYNE4-207ENST00000505054 SIX4Q9UIU6 781 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 CTNND2Q9UQB3 1225 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 FRMD4BQ9Y2L6 1034 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 SPTBN4Q9H254 2564 aa18.18■□□□□ 0.5
SYNE4-207ENST00000505054 RIF1Q5UIP0 2472 aaKnown RBP18.17■□□□□ 0.5
SYNE4-207ENST00000505054 MTCL1Q9Y4B5 1905 aaKnown RBP18.17■□□□□ 0.5
SYNE4-207ENST00000505054 LRRIQ3A6PVS8 624 aaPredicted RBP18.17■□□□□ 0.5
SYNE4-207ENST00000505054 MAPK13O15264 365 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 TRAPPC3O43617 180 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 ITGB3P05106 788 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 CNPP09543 421 aaKnown RBP18.17■□□□□ 0.5
SYNE4-207ENST00000505054 AOC1P19801 751 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 KLRC2P26717 231 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 POLR2BP30876 1174 aaKnown RBP18.17■□□□□ 0.5
SYNE4-207ENST00000505054 LILRA4P59901 499 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 TDGQ13569 410 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 TTI2Q6NXR4 508 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 RBM43Q6ZSC3 357 aaKnown RBP18.17■□□□□ 0.5
SYNE4-207ENST00000505054 CEP57Q86XR8 500 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 GPR65Q8IYL9 337 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 FAM186BQ8IYM0 893 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 FLCNQ8NFG4 579 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 PARD3BQ8TEW8 1205 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 NELFBQ8WX92 580 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 PIK3R5Q8WYR1 880 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 ZNF516Q92618 1163 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 ANKRD36BP1Q96IX9 119 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 FNBP1Q96RU3 617 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 DUSP9Q99956 384 aaKnown RBP18.17■□□□□ 0.5
SYNE4-207ENST00000505054 RXFP1Q9HBX9 757 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 ITGA11Q9UKX5 1188 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 DMDP11532 3685 aa18.17■□□□□ 0.5
SYNE4-207ENST00000505054 DOCK8Q8NF50 2099 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 M0QZQ0 153 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 CETN3O15182 167 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 TNNI1P19237 187 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 PSMC2P35998 433 aaKnown RBP18.16■□□□□ 0.5
SYNE4-207ENST00000505054 DLG4P78352 724 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 CLDN10P78369 228 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 DUOXA2Q1HG44 320 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 C1orf220Q5T0J3 134 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 FRMD5Q7Z6J6 570 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 CCDC105Q8IYK2 499 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 CMASQ8NFW8 434 aaPredicted RBP18.16■□□□□ 0.5
SYNE4-207ENST00000505054 LNX1Q8TBB1 728 aaPredicted RBP18.16■□□□□ 0.5
SYNE4-207ENST00000505054 TMC2Q8TDI7 906 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 NKD2Q969F2 451 aaPredicted RBP18.16■□□□□ 0.5
SYNE4-207ENST00000505054 PCDHB8Q9UN66 801 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 AGAP1Q9UPQ3 857 aa18.16■□□□□ 0.5
SYNE4-207ENST00000505054 SYN3O14994 580 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 TEX28O15482 410 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms