RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PIK3CAP42336 1068 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 LIG4P49917 911 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SP4Q02446 784 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PLEKHA7Q6IQ23 1121 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PASD1Q8IV76 773 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 RHOT1Q8IXI2 618 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 KATNAL2Q8IYT4 538 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ABRAQ8N0Z2 381 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 FAM212AQ96EL1 285 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 NSRP1Q9H0G5 558 aaKnown RBP17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GINM1Q9NU53 330 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ABCF3Q9NUQ8 709 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 NFASCO94856 1347 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TCP11X1B4DZS4 312 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 THAP12O43422 761 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ACTR2P61160 394 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CUL2Q13617 745 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SNCBQ16143 134 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 C11orf91Q3C1V1 193 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PRUNE1Q86TP1 453 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PHF13Q86YI8 300 aaPredicted RBP17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CCDC50Q8IVM0 306 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ANKRD13AQ8IZ07 590 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ZBTB45Q96K62 511 aaPredicted RBP17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 FNBP1Q96RU3 617 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 OSBPL8Q9BZF1 889 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 JPH1Q9HDC5 661 aaPredicted RBP17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ADAM22Q9P0K1 906 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SLC9A2Q9UBY0 812 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 LGALS13Q9UHV8 139 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 AGO2Q9UKV8 859 aaKnown RBP17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ABT1Q9ULW3 272 aaKnown RBP17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TOMM70O94826 608 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GJB6O95452 261 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 KLRC2P26717 231 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ATP5DP30049 168 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ELF3P78545 371 aaPredicted RBP17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 MTERF2Q49AM1 385 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ZBTB41Q5SVQ8 909 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 LIN9Q5TKA1 542 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SCARA3Q6AZY7 606 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 RELL1Q8IUW5 271 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CKAP2Q8WWK9 683 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 FGFR1OP2Q9NVK5 253 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 EURLQ9NYK6 297 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CNTN6Q9UQ52 1028 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PTPRFP10586 1907 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GH1P01241 217 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ATP4AP20648 1035 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 IZUMO3Q5VZ72 239 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TMEM270Q6UE05 265 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TRIM72Q6ZMU5 477 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 C2orf69Q8N8R5 385 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SMC1BQ8NDV3 1235 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ASAP3Q8TDY4 903 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 NSUN6Q8TEA1 469 aaKnown RBP17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 DYDC1Q8WWB3 177 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 VCPIP1Q96JH7 1222 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ZIC5Q96T25 663 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 MLXIPLQ9NP71 852 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 AGAP1Q9UPQ3 857 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 USP15Q9Y4E8 981 aaPredicted RBP17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PCDHB4Q9Y5E5 795 aa17.05■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 H0YCG3 227 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CD58P19256 250 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GNA15P30679 374 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 EMC2Q15006 297 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TREML2Q5T2D2 321 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SNRNP48Q6IEG0 339 aaKnown RBP17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 HIBCHQ6NVY1 386 aaPredicted RBP17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ANKRD42Q8N9B4 389 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 EXD1Q8NHP7 514 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 KCNN1Q92952 543 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SLC10A4Q96EP9 437 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 KCNK9Q9NPC2 374 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 NAALADL1Q9UQQ1 740 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PIGRP01833 764 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 EDN1P05305 212 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CLTAP09496 248 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 BRAFP15056 766 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 FAM133BQ5BKY9 247 aaKnown RBP17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 XKR3Q5GH77 459 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TMEM63BQ5T3F8 832 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CCDC89Q8N998 374 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ZNF280CQ8ND82 737 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 MAGEC3Q8TD91 643 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TMEM143Q96AN5 459 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 C9orf72Q96LT7 481 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 MRPL47Q9HD33 250 aaKnown RBP17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ZNF214Q9UL59 606 aaPredicted RBP17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 USTQ9Y2C2 406 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 NUB1Q9Y5A7 615 aa17.04■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 LCTP09848 1927 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SPATA31C2B4DYI2 1134 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TLR3O15455 904 aaKnown RBP17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 UBOX5O94941 541 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TCF4P15884 667 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GLRA2P23416 452 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SP2Q02086 613 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms