RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 DRC1Q96MC2 740 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 CDK5RAP1Q96SZ6 601 aaKnown RBP4.83□□□□□ -1.64
USP54-217ENST00000498213 PORCNQ9H237 461 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 UCKL1Q9NWZ5 548 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 TMOD2Q9NZR1 351 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 ZNF112Q9UJU3 913 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 TCAF1Q9Y4C2 921 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 SLC4A7Q9Y6M7 1214 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 TRIOO75962 3097 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 GCN1Q92616 2671 aaKnown RBP4.82□□□□□ -1.64
USP54-217ENST00000498213 PLXNA3P51805 1871 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 UTYO14607 1347 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 C1QTNF3-AMACRE9PGA6 284 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 OPA1O60313 960 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 LPXNO60711 386 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 CNOT4O95628 575 aaKnown RBP4.82□□□□□ -1.64
USP54-217ENST00000498213 CSF1RP07333 972 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 ZNF888P0CJ79 500 aaPredicted RBP4.82□□□□□ -1.64
USP54-217ENST00000498213 IL1R1P14778 569 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 ZNF20P17024 532 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 CYP2C18P33260 490 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 FLT3P36888 993 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 MEOX1P50221 254 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 RAC3P60763 192 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 IL13RA1P78552 427 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 IRF9Q00978 393 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 TAP1Q03518 808 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 MFSD14BQ5SR56 506 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 PRAMEF19Q5SWL8 479 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 WDR78Q5VTH9 848 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 ZNF585AQ6P3V2 769 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 CXXC5Q7LFL8 322 aaKnown RBP4.82□□□□□ -1.64
USP54-217ENST00000498213 ZNF804AQ7Z570 1209 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 GPR142Q7Z601 462 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 FGD2Q7Z6J4 655 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 NOSTRINQ8IVI9 506 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 TMEM199Q8N511 208 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 LINS1Q8NG48 757 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 KCNG4Q8TDN1 519 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 GDPD5Q8WTR4 605 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 TBC1D22AQ8WUA7 517 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 SCLYQ96I15 445 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 SCYL1Q96KG9 808 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 GBP4Q96PP9 640 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 MPHOSPH8Q99549 860 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 BTBD2Q9BX70 525 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 KRTAP3-1Q9BYR8 98 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 KATNBL1Q9H079 304 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 MTIF3Q9H2K0 278 aaKnown RBP4.82□□□□□ -1.64
USP54-217ENST00000498213 SEC61A2Q9H9S3 476 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 TXNRD2Q9NNW7 524 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 CABP5Q9NP86 173 aa4.82□□□□□ -1.64
USP54-217ENST00000498213 ASH1LQ9NR48 2969 aaKnown RBP4.82□□□□□ -1.64
USP54-217ENST00000498213 MAST3O60307 1309 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 GPR42O15529 346 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 TAF5LO75529 589 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 ATP2A2P16615 1042 aaKnown RBP4.81□□□□□ -1.64
USP54-217ENST00000498213 IGFALSP35858 605 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 ETV4P43268 484 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 TOP3AQ13472 1001 aaPredicted RBP4.81□□□□□ -1.64
USP54-217ENST00000498213 ICAM4Q14773 271 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 FAM47AQ5JRC9 791 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 OVCH1Q7RTY7 1134 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 FAM83AQ86UY5 434 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 ADHFE1Q8IWW8 467 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 SCYL3Q8IZE3 742 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 GPRC5AQ8NFJ5 357 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 TDRD7Q8NHU6 1098 aaKnown RBP4.81□□□□□ -1.64
USP54-217ENST00000498213 ASB15Q8WXK1 588 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 PAGR1Q9BTK6 254 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 BOCQ9BWV1 1114 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 C1QTNF3Q9BXJ4 246 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 MEGF9Q9H1U4 602 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 OR10A5Q9H207 317 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 C12orf65Q9H3J6 166 aaKnown RBP4.81□□□□□ -1.64
USP54-217ENST00000498213 PCIF1Q9H4Z3 704 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 GREM2Q9H772 168 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.81□□□□□ -1.64
USP54-217ENST00000498213 TRIM39Q9HCM9 518 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 IL23AQ9NPF7 189 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 SAMD15Q9P1V8 674 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 BTBD7Q9P203 1132 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 MORF4L1Q9UBU8 362 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 TBX21Q9UL17 535 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 MTUS1Q9ULD2 1270 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 FAM184BQ9ULE4 1060 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 HDAC5Q9UQL6 1122 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 NR2E1Q9Y466 385 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 ASB1Q9Y576 335 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 DMXL1Q9Y485 3027 aa4.81□□□□□ -1.64
USP54-217ENST00000498213 ANKRD18BA2A2Z9 1011 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 M0R2C6 588 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 MAP4K4O95819 1239 aaPredicted RBP4.8□□□□□ -1.64
USP54-217ENST00000498213 PGK1P00558 417 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 PDGFBP01127 241 aaPredicted RBP4.8□□□□□ -1.64
USP54-217ENST00000498213 ASLP04424 464 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 CYBAP13498 195 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 MAPK4P31152 587 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 SELENOPP49908 381 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 HMGCS2P54868 508 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms