RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 RBBP8NLQ8NC74 664 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 RMDN2Q96LZ7 410 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 CNOT10Q9H9A5 744 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 ADAM22Q9P0K1 906 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 MCM8Q9UJA3 840 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 HSPA6P17066 643 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 ERFP50548 548 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 ITGA8P53708 1063 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 GADL1Q6ZQY3 521 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 APOBEC3FQ8IUX4 373 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 C1orf131Q8NDD1 294 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 TRAPPC12Q8WVT3 735 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 C10orf88Q9H8K7 445 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 PASKQ96RG2 1323 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 SOWAHBA6NEL2 793 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 PODXLO00592 558 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 TP73O15350 636 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 USP2O75604 605 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 BRAFP15056 766 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 ARL2P36404 184 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 RTP1P59025 263 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 RPL7AP62424 266 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 MON1BQ7L1V2 547 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 AGAP11Q8TF27 550 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 PRPF31Q8WWY3 499 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 MTMR12Q9C0I1 747 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 AAASQ9NRG9 546 aa17.53■□□□□ 0.4
CCDC88B-210ENST00000494566 ATXN2Q99700 1313 aaKnown RBP17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 KAT6AQ92794 2004 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 BRCA1P38398 1863 aaKnown RBP17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 FARP2O94887 1054 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 GGPS1O95749 300 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 KRT16P08779 473 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 ZSCAN5DPP0CG00 497 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 TCF7P36402 384 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 NAMPTP43490 491 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 ADCY2Q08462 1091 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 NCOA4Q13772 614 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 TMED2Q15363 201 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 CYP1B1Q16678 543 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 SYCP2LQ5T4T6 812 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 C6orf118Q5T5N4 469 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 MOB2Q70IA6 237 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 NSMCE1Q8WV22 266 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 DDX27Q96GQ7 796 aaKnown RBP17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 FAM167BQ9BTA0 163 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 POC1B-GALNT4F8VUJ3 575 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 GOLGA8SH3BPF8 625 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 GOLGA8MH3BSY2 632 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 BANF1O75531 89 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 ARIH2O95376 493 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 PAEPP09466 180 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 NOMO3P69849 1222 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 R3HDM1Q15032 1099 aaKnown RBP17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 MORC4Q8TE76 937 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 TMEM237Q96Q45 408 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 PPP1R16BQ96T49 567 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 SNCAIPQ9Y6H5 919 aa17.52■□□□□ 0.4
CCDC88B-210ENST00000494566 CNTNAP2Q9UHC6 1331 aa17.52■□□□□ 0.39
CCDC88B-210ENST00000494566 A0A0B4J269 797 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 FSCN2O14926 492 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 CYP1A1P04798 512 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 STAT5BP51692 787 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 DRG2P55039 364 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 MCCD1P59942 119 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 CENPCQ03188 943 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 ART4Q93070 314 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 KLHL29Q96CT2 875 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 C12orf65Q9H3J6 166 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 GPRC5DQ9NZD1 345 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 WDR91A4D1P6 747 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 ADM5C9JUS6 153 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 ATP2A1O14983 1001 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 DIAPH2O60879 1101 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 CSDE1O75534 798 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 NUDT17P0C025 328 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 KRT10P13645 584 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 ETS1P14921 441 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 BRD2P25440 801 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 YY1P25490 414 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 ENOSF1Q7L5Y1 443 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 WEE2P0C1S8 567 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 CLDN10P78369 228 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 ORC1Q13415 861 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 XRCC4Q13426 336 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 MAMLD1Q13495 774 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 HSDL1Q3SXM5 330 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 GSTA5Q7RTV2 222 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 CEP120Q8N960 986 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 LRRC19Q9H756 370 aa17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.51■□□□□ 0.39
CCDC88B-210ENST00000494566 TLR3O15455 904 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 ATG7O95352 703 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 STX2P32856 288 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 MYL6P60660 151 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 CLUL1Q15846 466 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 WDR78Q5VTH9 848 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms