RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 PAN2Q504Q3 1202 aaKnown RBP12.2□□□□□ -0.46
MCF2L-231ENST00000494043 HGSNATQ68CP4 663 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 FAM117BQ6P1L5 589 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 DCLRE1AQ6PJP8 1040 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 TMEM270Q6UE05 265 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 CD300LGQ6UXG3 332 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 LIMS2Q7Z4I7 341 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 IRF2BP2Q7Z5L9 587 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 TMCO2Q7Z6W1 182 aaPredicted RBP12.2□□□□□ -0.46
MCF2L-231ENST00000494043 TMTC1Q8IUR5 882 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 TTC39CQ8N584 583 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 RABGGTAQ92696 567 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 ZNF689Q96CS4 500 aaPredicted RBP12.2□□□□□ -0.46
MCF2L-231ENST00000494043 TMEM175Q9BSA9 504 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 NRDE2Q9H7Z3 1164 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 CISHQ9NSE2 258 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 CXXC1Q9P0U4 656 aaPredicted RBP12.2□□□□□ -0.46
MCF2L-231ENST00000494043 DNAJB4Q9UDY4 337 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 PCDHB4Q9Y5E5 795 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.2□□□□□ -0.46
MCF2L-231ENST00000494043 FNDC1Q4ZHG4 1894 aaPredicted RBP12.19□□□□□ -0.46
MCF2L-231ENST00000494043 SOWAHDA6NJG2 315 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 CYP26A1O43174 497 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 HUS1O60921 280 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 CILPO75339 1184 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 B3GAT3O94766 335 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 KIF4AO95239 1232 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 SKILP12757 684 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 IGFBP6P24592 240 aaPredicted RBP12.19□□□□□ -0.46
MCF2L-231ENST00000494043 CLCN1P35523 988 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 OR1G1P47890 313 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 SLC11A1P49279 550 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 CDH8P55286 799 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 SOWAHAQ2M3V2 549 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 TDRD12Q587J7 1177 aaKnown RBP12.19□□□□□ -0.46
MCF2L-231ENST00000494043 CMTR2Q8IYT2 770 aaKnown RBP12.19□□□□□ -0.46
MCF2L-231ENST00000494043 TOP6BLQ8N6T0 577 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 RBBP8NLQ8NC74 664 aaPredicted RBP12.19□□□□□ -0.46
MCF2L-231ENST00000494043 CHP1Q99653 195 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 MRPL45Q9BRJ2 306 aaKnown RBP12.19□□□□□ -0.46
MCF2L-231ENST00000494043 ARHGAP20Q9P2F6 1191 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 HCSTQ9UBK5 93 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 L1RE1Q9UN81 338 aa12.19□□□□□ -0.46
MCF2L-231ENST00000494043 PRG3Q9Y2Y8 225 aaPredicted RBP12.19□□□□□ -0.46
MCF2L-231ENST00000494043 BZW2Q9Y6E2 419 aaKnown RBP12.19□□□□□ -0.46
MCF2L-231ENST00000494043 PTPRSQ13332 1948 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 SSU72P8A0A1W2PR75 194 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 F8W810 466 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 CYB561D2O14569 222 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 ARHGAP6O43182 974 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 TACC1O75410 805 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 ITGB1P05556 798 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 PLEKP08567 350 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-231ENST00000494043 FAM163BP0C2L3 166 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 EIF4A3P38919 411 aaKnown RBP12.18□□□□□ -0.46
MCF2L-231ENST00000494043 BPIFB4P59827 614 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 PTK2Q05397 1052 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 TIGD5Q53EQ6 642 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 DSTYKQ6XUX3 929 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 DPH6Q7L8W6 267 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 ADGRF2Q8IZF7 708 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 PDCL2Q8N4E4 241 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 APPL2Q8NEU8 664 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 EPS8L1Q8TE68 723 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 HASPINQ8TF76 798 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 KBTBD7Q8WVZ9 684 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 SENP8Q96LD8 212 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 SLC9A7Q96T83 725 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 YME1L1Q96TA2 773 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 MTIF3Q9H2K0 278 aaKnown RBP12.18□□□□□ -0.46
MCF2L-231ENST00000494043 HAUS4Q9H6D7 363 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 CWH43Q9H720 699 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 NHEJ1Q9H9Q4 299 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-231ENST00000494043 HMGXB4Q9UGU5 601 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 NOCTQ9UK39 431 aaKnown RBP12.18□□□□□ -0.46
MCF2L-231ENST00000494043 BARX2Q9UMQ3 279 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-231ENST00000494043 SLC4A7Q9Y6M7 1214 aa12.18□□□□□ -0.46
MCF2L-231ENST00000494043 ARHGEF37A1IGU5 675 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 M0QZQ0 153 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 NRP1O14786 923 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 GJB5O95377 273 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 ALDH2P05091 517 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 GALTP07902 379 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 ODC1P11926 461 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 CYP11B1P15538 503 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 WARSP23381 471 aaKnown RBP12.17□□□□□ -0.46
MCF2L-231ENST00000494043 ANXA13P27216 316 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 MAGEA10P43363 369 aaPredicted RBP12.17□□□□□ -0.46
MCF2L-231ENST00000494043 BRCC3P46736 316 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 PDE6CP51160 858 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 NDST1P52848 882 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 BCAR1P56945 870 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 HTRA4P83105 476 aaPredicted RBP12.17□□□□□ -0.46
MCF2L-231ENST00000494043 C1QBPQ07021 282 aaKnown RBP12.17□□□□□ -0.46
MCF2L-231ENST00000494043 BTG3Q14201 252 aaPredicted RBP12.17□□□□□ -0.46
MCF2L-231ENST00000494043 MTF1Q14872 753 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 RASIP1Q5U651 963 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 RAD9BQ6WBX8 426 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 ZNF571Q7Z3V5 609 aaPredicted RBP12.17□□□□□ -0.46
MCF2L-231ENST00000494043 NOP9Q86U38 636 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms