RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CPB2Q96IY4 423 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 TXLNGYQ9BZA5 131 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 TUT1Q9H6E5 874 aaKnown RBP22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 LRRC19Q9H756 370 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 GRHL1Q9NZI5 618 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 TLR3O15455 904 aaKnown RBP22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 PSTPIP1O43586 416 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 GJB6O95452 261 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 TMOD1P28289 359 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 DHX9Q08211 1270 aaKnown RBP22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 LLGL1Q15334 1064 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 DUSP28Q4G0W2 176 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 C1orf127Q8N9H9 656 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 TFAP2BQ92481 460 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 PARK7Q99497 189 aaKnown RBP22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 PCDHGC3Q9UN70 934 aa22.43■■□□□ 1.18
CCDC88B-208ENST00000492980 O00370 1275 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 ZEB2O60315 1214 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 MMP3P08254 477 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 KRT19P08727 400 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 HOXD8P13378 290 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 ARF4P18085 180 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 ACTN2P35609 894 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 TAS2R40P59535 323 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 SPRYD7Q5W111 196 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 CCDC105Q8IYK2 499 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 TMEM35BQ8NCS4 154 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 UBLCP1Q8WVY7 318 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 PTPN18Q99952 460 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 HERPUD2Q9BSE4 406 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 NXF1Q9UBU9 619 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 PPFIA2O75334 1257 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 CALB1P05937 261 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 CDH5P33151 784 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 MAN1A1P33908 653 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 RPL21P46778 160 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 YWHAEP62258 255 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 CEP85LQ5SZL2 805 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 JADE1Q6IE81 842 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 PLEKHH3Q7Z736 793 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 RHOT1Q8IXI2 618 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 TMEM130Q8N3G9 435 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 SH2D3CQ8N5H7 860 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 ZNF518BQ9C0D4 1074 aa22.42■■□□□ 1.18
CCDC88B-208ENST00000492980 TCRBV5S1A1TA0A578 114 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 SHOX2O60902 331 aaPredicted RBP22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 KCNJ1P48048 391 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 GRIK4Q16099 956 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 FAM110CQ1W6H9 321 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 SGO2Q562F6 1265 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 MARCH8Q5T0T0 291 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 KCTD16Q68DU8 428 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 WDTC1Q8N5D0 677 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 TINF2Q9BSI4 451 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 BCO2Q9BYV7 579 aa22.41■■□□□ 1.18
CCDC88B-208ENST00000492980 GBP1P32455 592 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 RAP1GAPP47736 663 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 PLTPP55058 493 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 RPL7AP62424 266 aaKnown RBP22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 ACVR2BQ13705 512 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 ZNF667Q5HYK9 610 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 OR6J1Q8NGC5 347 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 OR2W6PQ8NHA6 318 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 CXorf38Q8TB03 319 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 C1orf54Q8WWF1 131 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 NLRP7Q8WX94 980 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 ABHD16BQ9H3Z7 469 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 ZNF236Q9UL36 1845 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 TMEM191CA6NGB0 347 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 ZNF844Q08AG5 666 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 KATNAL2Q8IYT4 538 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 NPLOC4Q8TAT6 608 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 FBXO25Q8TCJ0 367 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 MAIP1Q8WWC4 291 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 SLCO2A1Q92959 643 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 TMBIM4Q9HC24 238 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 IP6K2Q9UHH9 426 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 USTQ9Y2C2 406 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 PTPN22Q9Y2R2 807 aa22.4■■□□□ 1.18
CCDC88B-208ENST00000492980 TSPAN1O60635 241 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 RPS6KA5O75582 802 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 ITGB3P05106 788 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 EIF4BP23588 611 aaKnown RBP22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 SLC10A6Q3KNW5 377 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 WDR72Q3MJ13 1102 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 SPDYCQ5MJ68 293 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 LEKR1Q6ZMV7 388 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 FAXDC2Q96IV6 333 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 ATP6V1G3Q96LB4 118 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 SDCBP2Q9H190 292 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 ASB7Q9H672 318 aa22.39■■□□□ 1.18
CCDC88B-208ENST00000492980 PASKQ96RG2 1323 aa22.39■■□□□ 1.17
CCDC88B-208ENST00000492980 ADCY6O43306 1168 aa22.39■■□□□ 1.17
CCDC88B-208ENST00000492980 ERLIN2O94905 339 aa22.39■■□□□ 1.17
CCDC88B-208ENST00000492980 ECEL1O95672 775 aa22.39■■□□□ 1.17
CCDC88B-208ENST00000492980 LACTBP83111 547 aaPredicted RBP22.39■■□□□ 1.17
CCDC88B-208ENST00000492980 DNAJC24Q6P3W2 148 aa22.39■■□□□ 1.17
CCDC88B-208ENST00000492980 C2orf69Q8N8R5 385 aa22.39■■□□□ 1.17
CCDC88B-208ENST00000492980 CHST7Q9NS84 486 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms